PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0017.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family BBR-BPC
Protein Properties Length: 291aa    MW: 32611.1 Da    PI: 9.0039
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind262.52.4e-801329026301
          GAGA_bind  26 lqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlse. 116
                         +l+++iaerda+i ern a++ek aa  erd a+lqrd+a a+r+ a+ erd +++al+ + +  +     +  + +++k  +s  ++++ 
  MapolyY_B0017.1.p  13 RKLITMIAERDAAILERNSAIAEKVAAREERDTALLQRDMAYADRDSAIEERDAAVAALEIAMTDRNIL--EKRVATKDSKLFQSFSMTKNc 102
                        689******************************************************999988875522..344555666666666665554 PP

          GAGA_bind 117 ...pqledsavelreeeklealpie.eaaeeakekkkkkkrqrakkpkekkak..kkkkks.ekskkkvkkesad.erskaekksidlvlng 200
                             +++s+  +++ + + a++   + + ++ke +   +r+r+ + k++  +  ++k++  ++++++ ++ ++  e+ +  + + ++ +++
  MapolyY_B0017.1.p 103 tllGAIQPSSLSTSRFSSIVAEQSDlCRNGSSKEDQVGLSRKRKIVVKSTLDRtlRTKRSYlSANEERGHEIGDGeETDHYARSKEEIYVEN 194
                        44444555555543333332222220223333333333333333333333333223333320222233333333334455555666666665 PP

          GAGA_bind 201 vslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292
                        v     + P+P CsCtG+ +qCY+WGnGGWqS+CCtt iS+yPLP+++++rg+R+agrKmS gaf+klLekLa eG +++ pvDLkdhWAkH
  MapolyY_B0017.1.p 195 V-----RYPIPHCSCTGVKQQCYRWGNGGWQSSCCTTMISMYPLPMNPTKRGSRLAGRKMSAGAFEKLLEKLALEGVNVNYPVDLKDHWAKH 281
                        5.....66************************************************************************************ PP

          GAGA_bind 293 Gtnkfvtir 301
                        Gtn++vt+r
  MapolyY_B0017.1.p 282 GTNRYVTLR 290
                        *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.7E-671290IPR010409GAGA-binding transcriptional activator
PfamPF062173.6E-7312290IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQLSMHHTDA AVRKLITMIA ERDAAILERN SAIAEKVAAR EERDTALLQR DMAYADRDSA  60
IEERDAAVAA LEIAMTDRNI LEKRVATKDS KLFQSFSMTK NCTLLGAIQP SSLSTSRFSS  120
IVAEQSDLCR NGSSKEDQVG LSRKRKIVVK STLDRTLRTK RSYLSANEER GHEIGDGEET  180
DHYARSKEEI YVENVRYPIP HCSCTGVKQQ CYRWGNGGWQ SSCCTTMISM YPLPMNPTKR  240
GSRLAGRKMS AGAFEKLLEK LALEGVNVNY PVDLKDHWAK HGTNRYVTLR *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391178.13e-73serine/threonine-protein kinase 24-like
TrEMBLA0A2R6VWT10.0A0A2R6VWT1_MARPO; Uncharacterized protein
STRINGPP1S56_2V6.11e-72(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.14e-56basic pentacysteine 6