PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0005.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HSF
Protein Properties Length: 503aa    MW: 55647.9 Da    PI: 4.9997
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.75.9e-36541452102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+ ++ ++sws+++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +gk++l
  MapolyY_B0005.1.p  54 FLNKTYDMVDDPLTDAIVSWSTSNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKRHL 136
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  MapolyY_B0005.1.p 137 LKNIHRRKP 145
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3549143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-6450143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.7E-3950143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3154143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-19105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MMESPPSESV KSWASGCKEN SANTSPRSIL SDNMATSTAP QAMDGLQSSG PPPFLNKTYD  60
MVDDPLTDAI VSWSTSNNSF IVWNPPEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  120
RWEFANEGFL RGKRHLLKNI HRRKPVSHHH SPPLPQQQSQ TSTLGPCVEV GKFGLEGEIE  180
RLKRDKNVLM LELVRLRQQQ QATERELQVM GQRLQVTEQR QQQMMTFLAK AMQNPSFLAQ  240
LVQQNENNKR HASDRKRRRL PKQENGSESG TSGSEGQIVK YQPTNSDSAR AMLMQFLSSS  300
DLTPKVEVSS PLEALFGTLD TVSTDPVEGS DLANRYCGVT LTEMQVCAAD IPHISTSSEN  360
QIEPSSQLLS PGSKESARLE VYGLNSSCEK GLTEHNSDPR EATRESSASV MGLSPVLETG  420
TGDGEAKIVS NQGLVGPGMN DIFWEQFLSG NPDSPDTESE DTETAENSLP DVDKDSPQWW  480
NSKPTVDRLA EQMGQLAPGT NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27281436129Heat shock factor protein 1
5d5v_B3e-27281436129Heat shock factor protein 1
5d5v_D3e-27281436129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254258RKRRR
2255259KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382543.11e-149heat stress transcription factor A-1b-like
SwissprotO818211e-123HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A2R6VWN40.0A0A2R6VWN4_MARPO; Uncharacterized protein
STRINGPP1S249_84V6.11e-148(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-112heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]