PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly1089s0002.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 597aa    MW: 64604.9 Da    PI: 5.4256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly1089s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +lv +v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Mapoly1089s0002.1.p 18 KGPWTSAEDAILVAYVTKHGEGNWNSVQKHSGLYRCGKSCRLRWANHL 65
                         79******************************************9986 PP
2Myb_DNA-binding50.16.4e-1671114146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+  +++++++lG++ W++ a+ ++ gRt++++k++w++
  Mapoly1089s0002.1.p  71 KGAFTPEEERMIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 114
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7941565IPR017930Myb domain
SuperFamilySSF466893.41E-3016112IPR009057Homeodomain-like
SMARTSM007172.8E-141767IPR001005SANT/Myb domain
PfamPF002493.6E-141865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231972IPR009057Homeodomain-like
CDDcd001679.67E-112065No hitNo description
PROSITE profilePS5129425.73366120IPR017930Myb domain
SMARTSM007173.7E-1670118IPR001005SANT/Myb domain
PfamPF002495.4E-1571114IPR001005SANT/Myb domain
CDDcd001679.98E-1273114No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2673120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MELGSAPDFS EDVGALKKGP WTSAEDAILV AYVTKHGEGN WNSVQKHSGL YRCGKSCRLR  60
WANHLRPNLK KGAFTPEEER MIIELHAKLG NKWARMAAQL PGRTDNEIKN YWNTRIKRRM  120
RAGLPVYPPE MQNPAANSQY LFEHGEMSMS SGGESECDPG SSPSTGDFQN LSVSGMHGGC  180
RMKSCSSLTG MSDLPLSSVV TQTLSAGQSI SSPGRRMKRM HRDTQCSSMS GASGGGGLFP  240
QLSDESSKTM PYFKARRSCG TRNSMRLAQI AGFPYDPDPE GLHFEGMPNH GYLNLPPFSC  300
SRPNSSLKLE LPSSQSAESA DSAGTPGSAM TSPYTAFSLP QNHHLLSSEA DSFGSNNSNN  360
SSFLQALLQE AQNLDPGRDQ IRSAELSDQL LVLTSANPPM DVSALMSPRK SRWGEDSDPT  420
TPLEGRTYSM FSEDTSPNCT SNWDETSTLQ SPLTTVSSNL QAAHVGGLKI ENSAQHDMPC  480
GNYGDEENLI SSLLDFARPD ATPVVEWYNP PDVYTLGGQP CHSLPEAIEA AFHHQDVVAE  540
LEHLGAAGHP VANHVWELGS CPWNNMPGVC QLGDLPTDCR PLTSIADQMN DPCAIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32161205108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B4Z1R70.0A0A1B4Z1R7_MARPO; Myb domain protein 33-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-69myb domain protein 33