PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0874s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB | ||||||||
Protein Properties | Length: 580aa MW: 64320.5 Da PI: 7.0862 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ + q G+g +W t +++ g++R++k+c++rw +yl Mapoly0874s0001.1.p 14 KGPWSPDEDAKLKAFIDQNGTGgNWITLPSKAGLKRCGKSCRLRWINYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++E+ l++++++ G++ W++Ia++++ gRt++++k++w++ Mapoly0874s0001.1.p 69 GSFTEDEETLIYKLHASIGSR-WSLIAAKLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.225 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.64E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-11 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-21 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.43E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.378 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPD EDAKLKAFID QNGTGGNWIT LPSKAGLKRC GKSCRLRWIN 60 YLRPDIKHGS FTEDEETLIY KLHASIGSRW SLIAAKLPGR TDNDIKNYWN TRLKKKLGEK 120 CLDQASSARF QRPSPPQQDS FTSERIDDVV PAPCKAPAAL NGLTAPSDGL LSPFLKPSHQ 180 QQQQQYSKLH DRTLLRDVAQ AQAQAQAQAL PPMTMQHQPQ PQPQPQPQQQ QQHQHNHQQH 240 QHQHQQQQQQ QVGLVKSEVP VVAAAMAAVG VVSTDGGADE DATRQLMRIE SSLRSCISSH 300 PSSHPSPASS CSGISTDRST YAPTGAQCAE SSYSECLSSG GFRDEQQQHC IQDPEAQLTA 360 ITSAASPTLL GHSSVIQADV GGRGAEVPAL EFEPRLADVA ALDDEMQAAL FVQDELSPAH 420 CRNLLGVVKA EDCNFDRYDW WGATTGIVAA PKHQPPARTL ISAAVKQQQQ QQQQQQHHHH 480 QHQQQHQHQQ QQQQQQQEQL QLQYLQLQYL QQHQHHRYGE PLSSTQLSLD EISMQCYMKP 540 SSWTLPAPSS CNGNANLISI ADYSNQIRLP WDSAWAETR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6VYC4 | 0.0 | A0A2R6VYC4_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-67 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0874s0001.1.p |