PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0318s0001.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 299aa    MW: 33788.3 Da    PI: 4.115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0318s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-1686132148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W +eEd++ +++v+ lG+++W++Ia+ ++ gR +kqc++rw+++l
  Mapoly0318s0001.1.p  86 KGYWIKEEDDKMLELVNTLGTKSWAAIASSLP-GRNGKQCRERWFNHL 132
                          688*****************************.*************97 PP
2Myb_DNA-binding431.1e-13138181146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + +W++ Ed  l  a++++G++ W+ Ia+ ++ gR+++++k+rw++
  Mapoly0318s0001.1.p 138 KEPWSEAEDIMLFWAHQRFGNR-WADIAKIIP-GRSENSIKNRWNT 181
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.84381136IPR017930Myb domain
SuperFamilySSF466891.35E-2884179IPR009057Homeodomain-like
SMARTSM007173.5E-1385134IPR001005SANT/Myb domain
PfamPF002491.3E-1586132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2488138IPR009057Homeodomain-like
CDDcd001673.49E-1289132No hitNo description
PROSITE profilePS5129417.758137187IPR017930Myb domain
SMARTSM007172.1E-12137185IPR001005SANT/Myb domain
PfamPF002493.1E-13138181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-22139186IPR009057Homeodomain-like
CDDcd001672.89E-10140181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEGSSSLTLP KLPLRRCLED ISNSSEPNLP SAAFVDSPLD KKETMNYEQL SKVQRKKLET  60
NCCEFTEPVR YSVTSPLAEG SQSNVKGYWI KEEDDKMLEL VNTLGTKSWA AIASSLPGRN  120
GKQCRERWFN HLDPQLKKEP WSEAEDIMLF WAHQRFGNRW ADIAKIIPGR SENSIKNRWN  180
TGLKKRAAAL EDYSENWVNK NTFGELSSLS DNVAPTNLDA SQDILVFNGQ PNTHLQDSNA  240
TEDLLALNSE FGADEFDDMD VDDDNVPEFD MDVDDDIPPE FDVDVVDDCF PDFDDFCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-39851876108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VE160.0A0A176VE16_MARPO; Uncharacterized protein
TrEMBLA0A2R6VZ010.0A0A2R6VZ01_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.28e-38myb domain protein 3r-5