PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0210s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 34060.4 Da PI: 5.1803 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61 | 2.6e-19 | 63 | 107 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l av+q+ g++Wk+Ia+ ++ +R+++qc +rwqk+l Mapoly0210s0005.1.p 63 SWTEEEDTALRAAVEQFKGRNWKKIAANVP-NRSDNQCLNRWQKVL 107 6*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 7.7e-19 | 113 | 158 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd++l++ v+++G++tW++Iar ++ R +kqc++rw + Mapoly0210s0005.1.p 113 KGSWTKEEDDKLLEMVNEFGTKTWAAIARSLP-SRNGKQCRERWCNN 158 799*****************************.***********996 PP | |||||||
3 | Myb_DNA-binding | 44.4 | 3.9e-14 | 165 | 207 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W +eEd +l a+k++G+ W++Ia+ ++ gR+++ +k+rw+ Mapoly0210s0005.1.p 165 KEPWNEEEDMKLFLAHKRFGNS-WSKIAKLIP-GRSENGIKNRWN 207 679*****************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.078 | 54 | 107 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-15 | 57 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 60 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-13 | 63 | 107 | No hit | No description |
Pfam | PF00249 | 6.5E-17 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 63 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.845 | 108 | 163 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-30 | 111 | 206 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 112 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-14 | 115 | 159 | No hit | No description |
Pfam | PF13921 | 1.3E-18 | 116 | 176 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 118 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 164 | 212 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.286 | 164 | 214 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-20 | 166 | 213 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.11E-10 | 167 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEKMEASTSS TLPKLPLRRC LEDISNSSEP NLPSAAVVDV TLGTKGKKLR VYHAPRRRRP 60 YTSWTEEEDT ALRAAVEQFK GRNWKKIAAN VPNRSDNQCL NRWQKVLDPA LVKGSWTKEE 120 DDKLLEMVNE FGTKTWAAIA RSLPSRNGKQ CRERWCNNLD PQIKKEPWNE EEDMKLFLAH 180 KRFGNSWSKI AKLIPGRSEN GIKNRWNITI QKRADALEQS TENWINRNTF EDMLSIIDDV 240 APTELDVSED HLALNGEANI DLQDSNAAKD LIAWNLEFDM DVDVDNFLDL PDLNLSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-57 | 62 | 214 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-57 | 62 | 214 | 7 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016716089.1 | 1e-66 | PREDICTED: myb-related protein 315-like | ||||
Refseq | XP_017613539.1 | 9e-67 | PREDICTED: myb-related protein 315-like | ||||
Swissprot | Q94FL9 | 2e-58 | MB3R4_ARATH; Transcription factor MYB3R-4 | ||||
TrEMBL | A0A2R6W091 | 0.0 | A0A2R6W091_MARPO; Uncharacterized protein | ||||
STRING | XP_002505942.1 | 3e-63 | (Micromonas sp. RCC299) | ||||
STRING | EFJ27664 | 1e-61 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 3e-61 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0210s0005.1.p |
Publications ? help Back to Top | |||
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