PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0175s0020.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

HB-other

Protein Properties

Length: 610aa MW: 68724.6 Da PI: 4.724

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0175s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.1	6.1e-08	550	584	20	54
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + ++yps+ee++ LAk gL+ +q+ +WF N+R + Mapoly0175s0020.1.p 550 QGKPYPSEEEKQILAKCSGLEIDQINNWFINQRKR 584 679******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.625	525	584	IPR001356	Homeobox domain
SMART	SM00389	1.1E-4	526	592	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-14	528	586	IPR009057	Homeodomain-like
CDD	cd00086	2.85E-9	529	585	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.1E-21	533	586	IPR009057	Homeodomain-like
Pfam	PF05920	4.5E-16	545	584	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010073	Biological Process	meristem maintenance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MLGSSSFFDF NFDQEVANLH LSDYCQTEPQ TPLINTHTTL FTQGSSPNYQ SQVSVDLQTE 60 SFELSPRGLS TMTISEDTGS EYHAATTEPF LYLSDLETPL QNTADGKQDV TLSVNLTASD 120 TTVRAEIQES GEKPPCNSGH SLLDSISYNS SREAENDIEF WLRAYTAPSK NLPFGCGEPK 180 KTYHKIADGN CNVVDQKPWG PQLLQSSEAP NHVLSLETRK DGNSSQVILE GQSNLVEVQT 240 ATRRSPRSLE ALKDLGIFMF GETEEPCPTV AEGKLNIENT DTLWQPQSEP HDDTLFGELF 300 NFDDRAEDED HRQYVLGSML EELEKFVDKS DNELCRSSET TNELDLQCLI VHHPDLPKII 360 VASLACYKIR ADEEEKKQLD EVANLSLSKL PAQDQLLGRG YSSKGKDPRL DLCLDKYLKA 420 LDELEKHISK LVTSADTHCV QMKQNILIQC PELGDVSKQS ESDSVSGGQS ELFTEEMEKI 480 IQDHEKAKDR PQRSALPMLT DQEWRGAILA AYNPSLLRTL KTRHLKEGRR NLKLPDPARR 540 ILLNWWTEHQ GKPYPSEEEK QILAKCSGLE IDQINNWFIN QRKRHCCSAF SENHKNHAAD 600 CYKMNGPRR*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MLGSSSFFDF NFDQEVANLH LSDYCQTEPQ TPLINTHTTL FTQGSSPNYQ SQVSVDLQTE  60
SFELSPRGLS TMTISEDTGS EYHAATTEPF LYLSDLETPL QNTADGKQDV TLSVNLTASD  120
TTVRAEIQES GEKPPCNSGH SLLDSISYNS SREAENDIEF WLRAYTAPSK NLPFGCGEPK  180
KTYHKIADGN CNVVDQKPWG PQLLQSSEAP NHVLSLETRK DGNSSQVILE GQSNLVEVQT  240
ATRRSPRSLE ALKDLGIFMF GETEEPCPTV AEGKLNIENT DTLWQPQSEP HDDTLFGELF  300
NFDDRAEDED HRQYVLGSML EELEKFVDKS DNELCRSSET TNELDLQCLI VHHPDLPKII  360
VASLACYKIR ADEEEKKQLD EVANLSLSKL PAQDQLLGRG YSSKGKDPRL DLCLDKYLKA  420
LDELEKHISK LVTSADTHCV QMKQNILIQC PELGDVSKQS ESDSVSGGQS ELFTEEMEKI  480
IQDHEKAKDR PQRSALPMLT DQEWRGAILA AYNPSLLRTL KTRHLKEGRR NLKLPDPARR  540
ILLNWWTEHQ GKPYPSEEEK QILAKCSGLE IDQINNWFIN QRKRHCCSAF SENHKNHAAD  600
CYKMNGPRR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6W2J3	0.0	A0A2R6W2J3_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-20	KNOTTED1-like homeobox gene 6

Link Out ? help Back to Top
Phytozome	Mapoly0175s0020.1.p