PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0175s0015.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NAC
Protein Properties Length: 460aa    MW: 51642.9 Da    PI: 6.3265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0175s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.6e-53441721128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          l pGfrFhPtdeelv +yL++k+ +k+l + evi+++diyk++PwdLp ++v+++ekewyfF++rd+ky+++ r+nr+t +g+Wkatg+d
  Mapoly0175s0015.1.p  44 LLPGFRFHPTDEELVGYYLRRKIMQKSLAV-EVITQLDIYKFDPWDLPkMAVAKGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTD 132
                          579************************999.99***************667888999********************************* PP

                  NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++++ +++++glkk+Lvfykgra kg ktdW+mhe+rl
  Mapoly0175s0015.1.p 133 RHIYASgGSKTIGLKKSLVFYKGRAAKGAKTDWMMHEFRL 172
                          *****977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5937204IPR003441NAC domain
PROSITE profilePS5100558.88244204IPR003441NAC domain
PfamPF023654.7E-2746172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MYDIVNNSSS LAVVAAVADQ EKNNKNNHVS MVADKSLLQD QDVLLPGFRF HPTDEELVGY  60
YLRRKIMQKS LAVEVITQLD IYKFDPWDLP KMAVAKGEKE WYFFCPRDRK YRNSARPNRV  120
TGAGFWKATG TDRHIYASGG SKTIGLKKSL VFYKGRAAKG AKTDWMMHEF RLPPTTDSPS  180
SSKAHPEDNA IQKDAWAVCR IFKKSTLAQQ RSANMVSQLW HQEMSPPTEE MVTTEEVEEP  240
QAGPGFAQSE RNEICSSNVN LDLDSSEDKT ESSSEERSSM SIQPKYIVET TTVNQQQHQH  300
QLKKEESTAT WPLLPMDCPK AANNFDGNLW ATPSLEMVND FLAHENTLRR GALDCVNSIL  360
SVPTSYGSHG QFIDLDLLEE YAIQDPQFHS GSSNMGQLQK PRTSSSSSSS NGTNHYVGHM  420
QPLNRKKLTL QIPSYPCAMQ PWDSLSPIYD LPSSQLECM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-544421017171NO APICAL MERISTEM PROTEIN
1ut4_B5e-544421017171NO APICAL MERISTEM PROTEIN
1ut7_A5e-544421017171NO APICAL MERISTEM PROTEIN
1ut7_B5e-544421017171NO APICAL MERISTEM PROTEIN
3swm_A5e-544421020174NAC domain-containing protein 19
3swm_B5e-544421020174NAC domain-containing protein 19
3swm_C5e-544421020174NAC domain-containing protein 19
3swm_D5e-544421020174NAC domain-containing protein 19
3swp_A5e-544421020174NAC domain-containing protein 19
3swp_B5e-544421020174NAC domain-containing protein 19
3swp_C5e-544421020174NAC domain-containing protein 19
3swp_D5e-544421020174NAC domain-containing protein 19
4dul_A5e-544421017171NAC domain-containing protein 19
4dul_B5e-544421017171NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VL350.0A0A176VL35_MARPO; Uncharacterized protein
TrEMBLA0A2R6W2H50.0A0A2R6W2H5_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-83NAC domain containing protein 94