PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0174s0011.1.p
Common NameMADS1
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MIKC_MADS
Protein Properties Length: 427aa    MW: 47411.9 Da    PI: 6.6874
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0174s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.86.1e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ien +nrqvt+skRrng++KKA+ELSvLCd+++avi+fs++gkl  +++
  Mapoly0174s0011.1.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDIAVIMFSPSGKLTQFCK 59
                         68**********************************************985 PP
2K-box15.66.9e-071192051397
                K-box  13 kaeslqqelakLkkeienLqreqRhllGe.dLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          + e+lq  l+k+  e +  +++ R ++Ge +++sL s+++L  +e++Le++l k+R++K +l  e+ +   +++++l ++ +  +++
  Mapoly0174s0011.1.p 119 EVEELQATLKKVLMEKQFFEQKARLFQGEeSINSLtSMNQLVAIERELEQALVKVRERKGQLGQEESQLALMRQQNLLQHGTFVQQM 205
                          678999999*******************737***96699************************999999999999998877766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.142161IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-32293IPR002100Transcription factor, MADS-box
CDDcd002653.13E-36274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-25323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.908120212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDIAVIMFSP SGKLTQFCKN  60
DRIEDVITRF ANTPLHERTK RKFENLEYLN KAIRKLNSER EMEGQQPRGM GYGEHNSLEV  120
EELQATLKKV LMEKQFFEQK ARLFQGEESI NSLTSMNQLV AIERELEQAL VKVRERKGQL  180
GQEESQLALM RQQNLLQHGT FVQQMMEMPA RGGTSNLSDG QSTATNIGGG QGSQFHSWMD  240
HRVNQDGYMD SAPTSMSMMS ASQMRETGGN SESTASFYQG ASQAQQMPLG GHGNHGNQLE  300
LRGGDGESNT NFFHGAKTEA GVQFFPGGSQ AQLVPLSGHG SQLELRGGDS EANSGFYGGL  360
QQQQQQQLPA VSHSSQVELR QQPITSSGIT GFRPSMMNQG LRVGPQGLSL ENFDDQNYEA  420
PNYYNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-16291189Myocyte-specific enhancer factor 2A
3kov_B2e-16291189Myocyte-specific enhancer factor 2A
3kov_I2e-16291189Myocyte-specific enhancer factor 2A
3kov_J2e-16291189Myocyte-specific enhancer factor 2A
3p57_A2e-16291189Myocyte-specific enhancer factor 2A
3p57_B2e-16291189Myocyte-specific enhancer factor 2A
3p57_C2e-16291189Myocyte-specific enhancer factor 2A
3p57_D2e-16291189Myocyte-specific enhancer factor 2A
3p57_I2e-16291189Myocyte-specific enhancer factor 2A
3p57_J2e-16291189Myocyte-specific enhancer factor 2A
5f28_A2e-16195194MEF2C
5f28_B2e-16195194MEF2C
5f28_C2e-16195194MEF2C
5f28_D2e-16195194MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344540.0GQ334454.1 Marchantia polymorpha MIKC* MADS-box transcription factor (MADS1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176WRJ70.0A0A176WRJ7_MARPO; Uncharacterized protein
TrEMBLD3IZT60.0D3IZT6_MARPO; MIKC* MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.22e-38AGAMOUS-like 67
Publications ? help Back to Top
  1. Zobell O,Faigl W,Saedler H,M
    MIKC* MADS-box proteins: conserved regulators of the gametophytic generation of land plants.
    Mol. Biol. Evol., 2010. 27(5): p. 1201-11
    [PMID:20080864]