PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0166s0022.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 304aa    MW: 34636.9 Da    PI: 7.3648
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0166s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-1586129347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rWT+eEde l   v+++Gg++W+ Ia  ++ +R++ qc +rw k+
  Mapoly0166s0022.1.p  86 RWTQEEDETLSAEVARHGGRNWRQIATALP-NRSEVQCLHRWTKV 129
                          8*****************************.***********986 PP
2Myb_DNA-binding59.29.2e-19136182148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd++ +++v+ lG+++W+++ar ++ gR +kqc++rw ++l
  Mapoly0166s0022.1.p 136 KGYWTKEEDDRMIELVAILGNKRWAAVARSLP-GRNGKQCRERWCNHL 182
                          689*****************************.*************96 PP
3Myb_DNA-binding39.81.1e-12188231146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + +WT  Ed+ l  a+++ G++ W+ Ia+ ++ gR+++ +k+rw++
  Mapoly0166s0022.1.p 188 KTPWTGAEDLMLFLAHQRVGNR-WAQIAKLLP-GRSDNGVKNRWNT 231
                          579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.96879130IPR017930Myb domain
SMARTSM007171.7E-1283132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2186147IPR009057Homeodomain-like
SuperFamilySSF466892.28E-1486140IPR009057Homeodomain-like
CDDcd001673.16E-1186130No hitNo description
PfamPF002491.8E-1386128IPR001005SANT/Myb domain
PROSITE profilePS5129427.416131186IPR017930Myb domain
SuperFamilySSF466893.59E-30133229IPR009057Homeodomain-like
SMARTSM007171.3E-15135184IPR001005SANT/Myb domain
PfamPF002493.0E-17136182IPR001005SANT/Myb domain
CDDcd001672.69E-13139182No hitNo description
Gene3DG3DSA:1.10.10.603.4E-24148188IPR009057Homeodomain-like
SMARTSM007175.1E-13187235IPR001005SANT/Myb domain
PROSITE profilePS5129417.386187237IPR017930Myb domain
PfamPF002491.0E-11188231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-22189236IPR009057Homeodomain-like
CDDcd001671.11E-8190231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGSSSPAVS KLPTRRRPED TGNSSVAYLA SEPEINLPED TDNSSVAYLA SEPEINHKKA  60
GHERINRKRH VLSHVTLHPP KKQFIRWTQE EDETLSAEVA RHGGRNWRQI ATALPNRSEV  120
QCLHRWTKVI HPGLVKGYWT KEEDDRMIEL VAILGNKRWA AVARSLPGRN GKQCRERWCN  180
HLDPQLKKTP WTGAEDLMLF LAHQRVGNRW AQIAKLLPGR SDNGVKNRWN TAVRKKEQQL  240
EEFCAEWDRQ NESGEHQLLT RGTVIGDLEA SASFFPPEAI FQVEDSKAAQ DDESLIYLNL  300
EDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-63862368158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-63862368158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716089.16e-63PREDICTED: myb-related protein 315-like
SwissprotQ087591e-61MYB_XENLA; Transcriptional activator Myb
TrEMBLA0A2R6W3E20.0A0A2R6W3E2_MARPO; Uncharacterized protein
STRINGEMJ206902e-61(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-60myb domain protein 3r-5