PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0165s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB_related | ||||||||
Protein Properties | Length: 474aa MW: 52791.8 Da PI: 9.8517 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 130 | 171 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W +eE ++l d+++q+ + + Ia +m+++Rt +++k+r++ Mapoly0165s0024.1.p 130 TWNKEETDQLFDLCEQFDLR-FIIIADRMPTTRTVEELKERYY 171 6*******************.*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 5.0E-28 | 103 | 176 | IPR032563 | DAMP1, SANT/Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 126 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-7 | 127 | 176 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-6 | 130 | 175 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MADAKDILGL PKVVGSGSEK RRSTKDGQKK PDGVSREVYA LTGGLPPIMP ALDPSNLKKK 60 KPVDSVKKVA WKWNQFTSSA RSDSLQLRHW VRVVDNVEPI GDYAFAKYNK AVDVVRYTDE 120 EYSKYLTDTT WNKEETDQLF DLCEQFDLRF IIIADRMPTT RTVEELKERY YSAAKAVLLS 180 RAGLPEDVAD HTLMKDIYNV QYETERKKAL GILLSQSRQQ EREDAEVLAE AKRIQEVRLS 240 AKIAEEAELP SNKSAAETTV NNEMVDKSPR TPLRPTSPAQ AAHAGPSTVA AAPAAPVPSV 300 TAVGTSPAIS GPRPPRVYLR SAYHAQMVQS SATQAGVRTS KRVDQLLEDY GCRAKVKNPT 360 KTVCEEHIEL RKELLTLIQL QKQLTWKENE VSVLRENPYA DIPTPSTPKR SHRGNDHERV 420 LTRATAVGAD TDSFSGERVN KREHKRKAPA RFSEAPASPP HQKRARKMKA SDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 1e-18 | 102 | 182 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 1e-18 | 102 | 182 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827136.1 | 0.0 | SWR1-complex protein 4 | ||||
Swissprot | Q8VZL6 | 1e-152 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | A0A2R6W3I3 | 0.0 | A0A2R6W3I3_MARPO; Uncharacterized protein | ||||
STRING | ERM94373 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6713 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 1e-137 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0165s0024.1.p |
Publications ? help Back to Top | |||
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