PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0159s0020.4.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 614aa    MW: 68817.6 Da    PI: 8.0237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0159s0020.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-07933526
                         --SGGGGTS...--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartG...tCkyGdrCkFaHg 26
                         +C   a+t     C+yGd+C+F+H 
  Mapoly0159s0020.4.p  9 ICAVVAKTRdpsKCPYGDKCQFNHN 33
                         6777777777779***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.38435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-41734IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.705.6E-74256501IPR013785Aldolase-type TIM barrel
SuperFamilySSF513954.52E-65260574No hitNo description
CDDcd028014.93E-96260496No hitNo description
PfamPF012071.8E-52264529IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360344362IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MARKSATNIC AVVAKTRDPS KCPYGDKCQF NHNLDVYMAQ KPPDLPGNCP SLESGEPCSY  60
SLTCRFAGTH KDFYVLESSK KKPSNVPANE RNILRKDYQK LLWKNKGQYP KADAQLRAMG  120
LMGKAFKLNT VDDEGPKGPD DQQVIVSSIP VTTVAEATVA EAIISGNNLD KTEQSLPGST  180
AKTHRTKRPK VITKGSAMDT NAEVDLNPDK NVQLEDTSFS QLLQEEGVNM PTAGKHHWRT  240
LYLESKLNPR EKKLIDFRDK LYLATLTTVG NLPFRRVCKS LGADITCGEM AMCRNLLQGA  300
SSEWALLRRH SSEDIFGVQI CGGFPDHVAR TAEMIERECE VDFIDINMGC PIDLVVNNGA  360
GSCLLTKPQR LEQIVRATAG VMEHPLTVKL RMGYYEGRNC AHTFMPNLYE WGVSAVTIHG  420
RTRQQRYSKL ANWDYVADCV NAATDKLQVI GNGDIMAYTD WDEHLRTPGS KLSTCMIARG  480
ALMKPWIFTE IKESRHWDIS SSERLDILRQ YVNAGLAHWG SDAKGVEVTR KFLLEWLSYM  540
HRYIPVGLLE VVPQRLNWRP PSYFGRNDLE TMMASESAVD WIKISEFLLG PVPPNFIFQP  600
KHKSNSYDQA ENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A7e-2525749227257tRNA-dihydrouridine synthase B
6ei9_B7e-2525749227257tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889313.10.0LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2R6W4170.0A0A2R6W417_MARPO; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGPP1S219_23V6.10.0(Physcomitrella patens)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]