PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0159s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C3H | ||||||||
Protein Properties | Length: 614aa MW: 68817.6 Da PI: 8.0237 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.7e-07 | 9 | 33 | 5 | 26 |
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C a+t C+yGd+C+F+H Mapoly0159s0020.2.p 9 ICAVVAKTRdpsKCPYGDKCQFNHN 33 6777777777779***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.38 | 4 | 35 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 17 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.20.20.70 | 5.6E-74 | 256 | 501 | IPR013785 | Aldolase-type TIM barrel |
SuperFamily | SSF51395 | 4.52E-65 | 260 | 574 | No hit | No description |
CDD | cd02801 | 4.93E-96 | 260 | 496 | No hit | No description |
Pfam | PF01207 | 1.8E-52 | 264 | 529 | IPR001269 | tRNA-dihydrouridine synthase |
PROSITE pattern | PS01136 | 0 | 344 | 362 | IPR018517 | tRNA-dihydrouridine synthase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008033 | Biological Process | tRNA processing | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MARKSATNIC AVVAKTRDPS KCPYGDKCQF NHNLDVYMAQ KPPDLPGNCP SLESGEPCSY 60 SLTCRFAGTH KDFYVLESSK KKPSNVPANE RNILRKDYQK LLWKNKGQYP KADAQLRAMG 120 LMGKAFKLNT VDDEGPKGPD DQQVIVSSIP VTTVAEATVA EAIISGNNLD KTEQSLPGST 180 AKTHRTKRPK VITKGSAMDT NAEVDLNPDK NVQLEDTSFS QLLQEEGVNM PTAGKHHWRT 240 LYLESKLNPR EKKLIDFRDK LYLATLTTVG NLPFRRVCKS LGADITCGEM AMCRNLLQGA 300 SSEWALLRRH SSEDIFGVQI CGGFPDHVAR TAEMIERECE VDFIDINMGC PIDLVVNNGA 360 GSCLLTKPQR LEQIVRATAG VMEHPLTVKL RMGYYEGRNC AHTFMPNLYE WGVSAVTIHG 420 RTRQQRYSKL ANWDYVADCV NAATDKLQVI GNGDIMAYTD WDEHLRTPGS KLSTCMIARG 480 ALMKPWIFTE IKESRHWDIS SSERLDILRQ YVNAGLAHWG SDAKGVEVTR KFLLEWLSYM 540 HRYIPVGLLE VVPQRLNWRP PSYFGRNDLE TMMASESAVD WIKISEFLLG PVPPNFIFQP 600 KHKSNSYDQA ENG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ei9_A | 7e-25 | 257 | 492 | 27 | 257 | tRNA-dihydrouridine synthase B |
6ei9_B | 7e-25 | 257 | 492 | 27 | 257 | tRNA-dihydrouridine synthase B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889313.1 | 0.0 | LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
Swissprot | Q7XT07 | 0.0 | DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
TrEMBL | A0A2R6W417 | 0.0 | A0A2R6W417_MARPO; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] | ||||
STRING | PP1S219_23V6.1 | 0.0 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0159s0020.2.p |
Publications ? help Back to Top | |||
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