PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0159s0020.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 720aa    MW: 80516.9 Da    PI: 7.763
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0159s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-07115139526
                          --SGGGGTS...--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                          +C   a+t     C+yGd+C+F+H 
  Mapoly0159s0020.1.p 115 ICAVVAKTRdpsKCPYGDKCQFNHN 139
                          6777777777779***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.38110141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4120140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.707.9E-74362607IPR013785Aldolase-type TIM barrel
CDDcd028016.14E-95366602No hitNo description
SuperFamilySSF513956.72E-65366680No hitNo description
PfamPF012072.5E-52370635IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360450468IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MEVCHEDMNF MLDFSGGVES LSPDEEKEAK EGRVGGEDVE MSDRSAKPDV SSMTVEELVA  60
KARAPIKKEF LTIAGVRVVN PHGVTGRSEK NDKTLISKRK LKKSRLEARK SATNICAVVA  120
KTRDPSKCPY GDKCQFNHNL DVYMAQKPPD LPGNCPSLES GEPCSYSLTC RFAGTHKDFY  180
VLESSKKKPS NVPANERNIL RKDYQKLLWK NKGQYPKADA QLRAMGLMGK AFKLNTVDDE  240
GPKGPDDQQV IVSSIPVTTV AEATVAEAII SGNNLDKTEQ SLPGSTAKTH RTKRPKVITK  300
GSAMDTNAEV DLNPDKNVQL EDTSFSQLLQ EEGVNMPTAG KHHWRTLYLE SKLNPREKKL  360
IDFRDKLYLA TLTTVGNLPF RRVCKSLGAD ITCGEMAMCR NLLQGASSEW ALLRRHSSED  420
IFGVQICGGF PDHVARTAEM IERECEVDFI DINMGCPIDL VVNNGAGSCL LTKPQRLEQI  480
VRATAGVMEH PLTVKLRMGY YEGRNCAHTF MPNLYEWGVS AVTIHGRTRQ QRYSKLANWD  540
YVADCVNAAT DKLQVIGNGD IMAYTDWDEH LRTPGSKLST CMIARGALMK PWIFTEIKES  600
RHWDISSSER LDILRQYVNA GLAHWGSDAK GVEVTRKFLL EWLSYMHRYI PVGLLEVVPQ  660
RLNWRPPSYF GRNDLETMMA SESAVDWIKI SEFLLGPVPP NFIFQPKHKS NSYDQAENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2436359827257tRNA-dihydrouridine synthase B
6ei9_B1e-2436359827257tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076441.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2R6W4170.0A0A2R6W417_MARPO; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_006487270.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP57511213
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]