PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0157s0010.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 1621aa    MW: 179068 Da    PI: 4.5841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0157s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-0715971620226
                           -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                           k ++Crf+++ G+Ck+Gd+C F Hg
  Mapoly0157s0010.1.p 1597 KDVPCRFHQK-GWCKRGDSCDFWHG 1620
                           6789**9999.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.4E-10495560IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.32E-9503560IPR011011Zinc finger, FYVE/PHD-type
CDDcd155683.86E-20508553No hitNo description
SMARTSM002492.0E-8508554IPR001965Zinc finger, PHD-type
PROSITE patternPS013590509569IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.101.6E-26755842IPR003121SWIB/MDM2 domain
SMARTSM001511.0E-6759844IPR019835SWIB domain
SuperFamilySSF475929.16E-23761839IPR003121SWIB/MDM2 domain
PfamPF022011.6E-19766838IPR003121SWIB/MDM2 domain
SuperFamilySSF1590426.54E-319021033IPR004343Plus-3 domain
PROSITE profilePS5136029.6849021035IPR004343Plus-3 domain
SMARTSM007191.4E-399021012IPR004343Plus-3 domain
PfamPF031263.7E-229071010IPR004343Plus-3 domain
SuperFamilySSF552771.7E-1713161374IPR003169GYF domain
PROSITE profilePS5082916.35813211375IPR003169GYF domain
CDDcd000724.91E-1913211376No hitNo description
SMARTSM004449.4E-2113221377IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.0E-1913231375IPR003169GYF domain
PfamPF022131.0E-1313241367IPR003169GYF domain
PROSITE profilePS5010314.5315951620IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-515961620IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-415971620IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1621 aa     Download sequence    Send to blast
MTGGDEVVDP SDQSASVEDD HIAAQATTKR DAQEGMDVLD EQVSAPELED PSSPAHSGAS  60
TAVMSTELYT ETGDPYSGTS SPDSPSKASS IVSPIANVEK SSEPMNEDPV STGEVENTPE  120
IEVDAMNVAK SSSQEFQDAE ISQNVADVIS SRTGVVEMIS TTEVQTPSVT DGPEMSTYMD  180
GATNNIERKE GEMRSQNLEL EGQSEVLVAV TSSLEVEQAI AEKGVSESNE PQSLPSMAAE  240
LPEEPNRMNT SKQDSNGKED DNVRRGNEDN HRIGITSPIN QIQPDVARAS DSSGPRNGNQ  300
MEQLDTSSSV HHNGLKEEVD EQDVTIERIR TAAEAEVRHE TFVSSLESGN EDLSEKGPKA  360
PAQEVSGPMS MSGLATLSVA VEEMDEGGRE LQARPEDSKE EVSALIATPA AIEVNVTTPA  420
SSSLTDVRAK TELEREMELY EASVKEEEAR MLAHMRSDQL LAGESTGDSK DLLNERKRAL  480
ESTPNEARKK RGKRVLSSEN LSKDEEDVCF ICFDGGDLVL CDRRTCPKAY HLTCIGRDTA  540
FFEKKGAWIC GWHFCTGCTK PANFQCYTCP TAYCSACLKK ADFLCVRQRK GLCEECWPIV  600
HMIENNETTN AEGVEVDFED QETYECLFKD YWVDLKQRLQ LTPAELDKDK QAAGSGGLYL  660
ENGESDAEDK GDVEDYNTGS DSGASGEGDD KMDTSDEAKK RKRGKAKAST IPASGDDAVM  720
GADSEPYILP EEEDVMEDVE EDDVEEYTEE DGDQKSDVQL REGWASKELI DFVKFMDEDP  780
KKPLTKFEVT KLLWAYIKSH KLQDPRKKTQ ILCDERLQTL FGKKTVNQYD MIKHVQSHYT  840
LKGAKSRRPN MVSDEVLKMD EDPNEEGVDD KYSKIRDVKD KRRRRKGDDD KFERPSVNEY  900
AAITPKNINL IYLRRQLLEE LLDDPEFDSK VCSTFVRIRV PGMVSKSEMC YRLVQVVGTR  960
LQAEAYKAGR KTTNIVLEIL NLQKREDVTV DLVSNHEFSE EECQRLRQSI KCGLIKTLTV  1020
GDIEDKAKDL QEAKVNDWFE TERQRLVNLR DRASEKGRKK ELRECVEKLQ ELNSPAFRAA  1080
KLHARPEVTA DPRMDPNYES DGNEDKSKDK MMMMDGSATI LERSPSAIGM GDKLATASNL  1140
KSSQLESGSR PEWDSARNKH SAWVENTRNR EVERGGFESG RSGDKMAYGR VPSYSIEDTN  1200
ERGYDERDRG WDKEWVMDER DTGVGTGWMG NGRNIRSAPA ERWTEKVNNI SAGIDGGRAG  1260
RSDYRGSTSL TGLTTPVYDG KADWNKPREL PTAPSMQSTF PLASQLTSTL SKAALEAAEK  1320
EKVWHYMDPT GTIQGPFSME QLRKWNTTGY FPLDLRIWRT NQPRDESVLL TDALAGRVQK  1380
ERIDSWGSAT VRAVDIASQP ALSVSALASG YNINKTSADG WRDNAGGSSS SWVDRGSSAD  1440
VAGRSTTSWG VDNGSRLGRD IISVPAVRDS SSDLKWKAGP AETGSWDTYG VGRSNNSYGT  1500
SPTRNSRAEA AARFDPANWG SRSDTVRTSE KDSWTSPSPG ADGGYSKPGG GGGRSSWGRG  1560
SSHNFRDSGG SWNSFNEDSG GGHDNSRPMK TSRGSKKDVP CRFHQKGWCK RGDSCDFWHG  1620
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A9e-165065741580Histone-lysine N-methyltransferase NSD3
4gnd_C9e-165065741580Histone-lysine N-methyltransferase NSD3
4gne_A9e-165065741580Histone-lysine N-methyltransferase NSD3
4gnf_A9e-165065741580Histone-lysine N-methyltransferase NSD3
4gng_A9e-165065741580Histone-lysine N-methyltransferase NSD3
4gng_D9e-165065741580Histone-lysine N-methyltransferase NSD3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475490RKRALESTPNEARKKR
2697703AKKRKRG
3880885KRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396631.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396632.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396633.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396634.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396635.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396636.10.0zinc finger CCCH domain-containing protein 19-like
RefseqXP_024396637.10.0zinc finger CCCH domain-containing protein 19-like
TrEMBLA0A2R6W4880.0A0A2R6W488_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-75nucleic acid binding;zinc ion binding;DNA binding