PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0157s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | G2-like | ||||||||
Protein Properties | Length: 551aa MW: 60562.1 Da PI: 7.1592 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.1 | 3.6e-32 | 96 | 149 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+ m+vkgLt++hvkSHLQ+YR+ Mapoly0157s0009.1.p 96 PRLRWTPDLHLCFVHAVERLGGQDRATPKLVLQRMDVKGLTIAHVKSHLQMYRS 149 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-31 | 92 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.126 | 92 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.68E-15 | 94 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 96 | 150 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-9 | 97 | 148 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MLLQGEISSG SDEGPTWRDP SSRKRRSSSS GDTQTPDRSS ENTHNIGRPG GGGGGGGGGG 60 GGSSPSASPR GSPCLGFSGM GRSGGQVRQY VRSKMPRLRW TPDLHLCFVH AVERLGGQDR 120 ATPKLVLQRM DVKGLTIAHV KSHLQMYRSM KNDENGQATM PQTERKIPEG PDSSETFPRI 180 RLQHSDNGTV LIKDEATNTQ HYHNFLHRQV LQPLDHHASS RHDSLAWMGQ PEWIPRAYTA 240 NENATVAPGS QAHWAAEHEG HQIDYWNKKD QILHTASSQG PGADDRNKRQ SVSIEWDRKP 300 GSVDEYPPRL NLMSDGWSRV PAAEDAYQMN DRLRKSEMET EWGKWRMHEV RVDAANRGLQ 360 AGSLGHSAYS NISTPLFKAA APAPQTRVDT DSSKGLQHLD QSAWESDVQG RIALELQLQR 420 NLELKRMQEE KTEEKLRSAA AAGHDQLHQH GSMNMHWMSK LVETSMEKSS KRPPALQLAE 480 DPPDSTLSLS SLSQSYSTSS QSRPVRSASV VNIPDMNDVE GPPLQMSEEA TCIQPPQGIT 540 LDLTMSIGAG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 97 | 151 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 26 | SRKRRS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6W491 | 0.0 | A0A2R6W491_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 1e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0157s0009.1.p |