PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0154s0047.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NF-X1
Protein Properties Length: 934aa    MW: 102940 Da    PI: 8.3968
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0154s0047.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.91.6e-06237255120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          CG H C+ lCH+GpCppCpq
  Mapoly0154s0047.2.p 237 CG-HECKLLCHPGPCPPCPQ 255
                          **.****************8 PP
2zf-NF-X116.71.6e-05396415119
             zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                          C+kH+Cq+ CH+GpC   C+
  Mapoly0154s0047.2.p 396 CSKHRCQERCHTGPCNTtCR 415
                          ***************99896 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590123191IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004387.2E-4237255IPR000967Zinc finger, NF-X1-type
CDDcd060082.25E-7279325No hitNo description
SMARTSM004380.095289308IPR000967Zinc finger, NF-X1-type
CDDcd060083.05E-7332373No hitNo description
SMARTSM004380.0088342361IPR000967Zinc finger, NF-X1-type
CDDcd060082.16E-8386435No hitNo description
SMARTSM004380.13396416IPR000967Zinc finger, NF-X1-type
CDDcd060084.49E-7439487No hitNo description
SMARTSM004386.8449468IPR000967Zinc finger, NF-X1-type
CDDcd060081.42E-9466513No hitNo description
SMARTSM004380.085476495IPR000967Zinc finger, NF-X1-type
SMARTSM0043852539554IPR000967Zinc finger, NF-X1-type
SMARTSM0043889562580IPR000967Zinc finger, NF-X1-type
SMARTSM004387.8645686IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027695713IPR000967Zinc finger, NF-X1-type
SMARTSM004381758779IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MGTSDRPPAR AGARAGAWAV PLHSRNPGQG SASSSATVST SNQVFAADRN LSNKDVTNKV  60
SVAEYEDSDS SEDHEDGKTD LEALQAAIFG EYTGGESLDD LNDAGIAKIR GLLVAARSGG  120
TACLICLERV RATDHVWDCK SGCYAIFHIT CIQSWARQAL NAAELRALNR LSAESFPGAA  180
AASVRWHCPK CRAEYTSSQI PREYRCFCSK EVNPGSDPWL TPHTCGERCG RQLDGDCGHE  240
CKLLCHPGPC PPCPQLVRVS CFCGAKSEVR RCGRSKFSCE SPCRKTLACR KHVCEGNCHD  300
GDCAPCTKTD KYSCQCKKEV AVRPCVDSDF RCEHPCEREL SCKRHVCERG CHAGACGECK  360
LAGRRSCPCG KKEYKGVGCE RAVPTCGSTC EKMLSCSKHR CQERCHTGPC NTTCRIVLVK  420
ACHCGGLKKE VPCHQEFLCD RKCQRIRDCT RHPCRKRCCD GDCPPCHEVC GKRLRCKNHK  480
CPAPCHREAC APCPVSVRIS CACGVTSFEV PCGMEKDQKP PRCSKRCQIP PRCSHGALCK  540
PHACHYGPCP PCQLPCKAEL PCGHKCNKRC HGPRPVPNPE YTLKPKKKKK VFEDPNAVMG  600
RPCPPCVEII TKQCLGQHLG IERMMVCSEA KEFQCGNACG NLQSCGNHFC NKPCHFIQTA  660
SGSDRSISLQ GTKEADSSDT CEQCPLECQK KRTLCPHPCP LPCHPGDCPP CKVLVKRGCY  720
CETMVHVYDC DSFTAASAKL KAKMLSCGGP CHRKLPNCAH MCSDICHLGP CQMANSCRKK  780
VIVRCECQRL KKEWLCSEVQ AAQRASQEEK SRTLIGLLPC DQICLKLAAE KKAKEETEQQ  840
LRQRRAKEAE AQVATPSLGK RRKNRYQVES QQETTRFQEF MSAARKVATV AVVVVLVCLV  900
GYFGFKGLLE LNTWMNRRDI ERMKKRPTYG PRF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1584590PKKKKKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402753.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2R6W4N30.0A0A2R6W4N3_MARPO; Uncharacterized protein
STRINGPP1S135_24V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors