PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0142s0034.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | Trihelix | ||||||||
Protein Properties | Length: 463aa MW: 52207.8 Da PI: 9.502 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.9 | 4.7e-17 | 55 | 136 | 1 | 78 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rW+ +e+l+Li+a+++ e+ r+++ + ++W+ ++ ++ e+g++r + qCk++w +l ++ykkik+ e+++ +s+s Mapoly0142s0034.1.p 55 RWSMNETLVLIAAKKKEMEEDRDARlrgritHDSNKWSLIALFCNEHGVHRDSSQCKKRWHSLYTEYKKIKDYEREG--GSVSY 136 8************98444444433223334499*****************************************997..44444 PP | |||||||
2 | trihelix | 59.7 | 7.5e-19 | 221 | 303 | 1 | 79 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rWt +e+l Li+a+++ ++ +++ ++ ++W+++++++ ++g++r + qCk++w nl ++ykki+++e+ s+++s + Mapoly0142s0034.1.p 221 RWTVHETLILIAAKKKETSDENDAPkrgrtvQDSKKWAAIARFCNDQGVKRDSMQCKKRWHNLYTEYKKIRDHERV--SGVESYW 303 8**************6666666432233345******************************************996..5666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.189 | 48 | 118 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2 | 52 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-13 | 54 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 55 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.74E-5 | 81 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.457 | 214 | 284 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2E-4 | 218 | 286 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.3E-12 | 220 | 303 | No hit | No description |
SuperFamily | SSF46689 | 8.16E-6 | 220 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-6 | 221 | 283 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MLADEVERSR KRGISQAVVR QMMDHEGAME HEALPGLGTG GDAGAHEERN TRASRWSMNE 60 TLVLIAAKKK EMEEDRDARL RGRITHDSNK WSLIALFCNE HGVHRDSSQC KKRWHSLYTE 120 YKKIKDYERE GGSVSYWLMS ADKRRESTLA PMFEREVFDR MDSFLSGTTK VVPEPTFDSG 180 APVLIGVADL DNQEHSQGSS MEMGGARSGA VGGEKNHRAS RWTVHETLIL IAAKKKETSD 240 ENDAPKRGRT VQDSKKWAAI ARFCNDQGVK RDSMQCKKRW HNLYTEYKKI RDHERVSGVE 300 SYWVMSVEKR RKSKLARMFE REVYDYMDDF LSRTPKVMPG STFENGRPSS VRDPVPPREP 360 LPEVGENNSA QQGSLMELGG LGSTAFGTGH ARKRQRRRLL SRDDAPDQKL VSVLESNGKA 420 MQAELAADRE LRKEQGANLI AVFDKLADGL GQIASAIHNL QK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 391 | 397 | RKRQRRR |
2 | 393 | 401 | RQRRRLLSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176WQ85 | 0.0 | A0A176WQ85_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W6C9 | 0.0 | A0A2R6W6C9_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP13565 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 4e-23 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0142s0034.1.p |