PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0132s0029.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 23715.1 Da PI: 9.6671 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.5e-08 | 28 | 50 | 3 | 25 |
SS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWk 25 rWT+eEdell +av q+ ++W+ Mapoly0132s0029.1.p 28 RWTPEEDELLQEAVVQYKAKNWR 50 9*******************886 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.1e-18 | 63 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd++ +++v +lG+++W+++ar+++ gR +kqc++rw++ Mapoly0132s0029.1.p 63 KGYWTKEEDQKMLELVGMLGTKRWAAVARCLP-GRIGKQCRERWYNQ 108 789*****************************.************96 PP | |||||||
3 | Myb_DNA-binding | 42.9 | 1.1e-13 | 115 | 159 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+ Ed +l a+k++G++ W+ I + ++ gR+++ +k+rw+++ Mapoly0132s0029.1.p 115 RDPWTEVEDMRLFLAHKRFGSK-WSQICSILP-GRSENGVKNRWNTH 159 799*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.157 | 21 | 56 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.4 | 25 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-5 | 28 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-10 | 28 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.423 | 58 | 113 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.23E-29 | 61 | 156 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-15 | 62 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-17 | 63 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.36E-12 | 66 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-25 | 75 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 114 | 162 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.857 | 114 | 164 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-12 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 116 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-7 | 117 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MEVEVSHLES SKKQHVTGAS SMRNRVERWT PEEDELLQEA VVQYKAKNWR LRWQKVLNPA 60 IVKGYWTKEE DQKMLELVGM LGTKRWAAVA RCLPGRIGKQ CRERWYNQLD PSIKRDPWTE 120 VEDMRLFLAH KRFGSKWSQI CSILPGRSEN GVKNRWNTHI KKKAFILEEY CRMWNNQQNS 180 SQNEELLGNE AAIKDLLSIS E* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-48 | 28 | 164 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-48 | 28 | 164 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002505942.1 | 8e-55 | predicted protein, partial | ||||
TrEMBL | A0A2R6W7X4 | 1e-146 | A0A2R6W7X4_MARPO; Uncharacterized protein | ||||
STRING | XP_002505942.1 | 3e-54 | (Micromonas sp. RCC299) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.2 | 9e-52 | Homeodomain-like protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0132s0029.1.p |