PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0122s0029.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family CO-like
Protein Properties Length: 371aa    MW: 40186.4 Da    PI: 5.9246
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0122s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box284.4e-092265340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ +++++++++C  ++ +lCe C  + H+       H++v
  Mapoly0122s0029.1.p 22 ARPCDVCGRERARWYCAADEAYLCEPCDGSVHNAnalasrHERV 65
                         578*****************************768888888876 PP
2CCT67.24.3e-23323366144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Mapoly0122s0029.1.p 323 REARVNRYREKRRTRLFSKKIRYEVRKLNAERRPRMKGRFVKRS 366
                          9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.9E-112067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7362067IPR000315B-box-type zinc finger
PfamPF006432.4E-72365IPR000315B-box-type zinc finger
CDDcd000212.54E-92467No hitNo description
PROSITE profilePS5101716.093323365IPR010402CCT domain
PfamPF062038.8E-18323365IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MKSKASAIGG MAAAMAIAGR AARPCDVCGR ERARWYCAAD EAYLCEPCDG SVHNANALAS  60
RHERVRLSPN GAPMKIDRHR KDDTTSTTSL ADQAPPDRLA ISSRKKQFRD NRASQRATAP  120
AGPPATLQAT PSAQQDPGSQ AFEVKLERSS PEDAQIYFDE LPRDPRSPLG SPCRDSKGEP  180
DYAHHFMVFD ECEVDDVLTP DECEAEGVAG GLESSAGDFD ALGEQEDSEA AGGSGMEKPE  240
PGMFLPLTST ASTVQSSKDE EGSHVPSLRL NYADILNAWS DRGTLWTGGH AQTVPEDSTS  300
DAAANPDHGV VPLLAGEDGN SAREARVNRY REKRRTRLFS KKIRYEVRKL NAERRPRMKG  360
RFVKRSAGEQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333349RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964778.11e-69zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2R6W9S50.0A0A2R6W9S5_MARPO; Uncharacterized protein
STRINGEFJ336166e-69(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.12e-28B-box type zinc finger protein with CCT domain