PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0113s0034.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family LFY
Protein Properties Length: 416aa    MW: 47846.7 Da    PI: 8.7246
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0113s0034.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY514.25.9e-1574641224384
              FLO_LFY  24 arlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaav 113
                          + ++++a   + ++  ++a   r++r+le+lf++yGvr++t+ak++e+GftvstLv+m++ eldd+++++s+i +++llvGeryGik+av
  Mapoly0113s0034.2.p  46 RMMQPSADNRSFEFGFTTAGGRREVRTLEDLFHGYGVRIATLAKMTEMGFTVSTLVNMTEAELDDVIQTISDILQMELLVGERYGIKSAV 135
                          33333333333344455555667799**************************************************************** PP

              FLO_LFY 114 raerrrleeeeaekkrrkll.sedeetaldalsqeglseepvqeekeaags.........................ggeglgeaelvaae 177
                          rae+++leee  e++r +ll +++++ +ld +++  +++e + +e+ + ++                         +g+++ + +l+a +
  Mapoly0113s0034.2.p 136 RAEKKHLEEEL-ERQRLELLtKSERKRKLDEVTSALVTKEGTVSEQRRESAmmmpesiapvnalnlnskeppllmgAGHSSLTPGLLALA 224
                          ********965.677777773555566888887776666655554333322234444555555555555555555433333444555555 PP

              FLO_LFY 178 ekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvq 267
                          e++s++e+k+  kkkqkr++ k                   ++gedge+r+rehPfivtepge argkknGLDYLfdLyeqC++fL qvq
  Mapoly0113s0034.2.p 225 ENSSDSEDKRLGKKKQKRRRPK-------------------EHGEDGEDRPREHPFIVTEPGEAARGKKNGLDYLFDLYEQCGKFLEQVQ 295
                          5555555555544444444444...................48999******************************************** PP

              FLO_LFY 268 kiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida 357
                          ++a+e+GekcPtkvtnqvfr+ak++ga yinkPkmrhYvhCYalhcLd ++snalr+ +kergenvGawr acy+plva+a++++wdi++
  Mapoly0113s0034.2.p 296 QLAREKGEKCPTKVTNQVFRHAKHTGAGYINKPKMRHYVHCYALHCLDIDQSNALRKLYKERGENVGAWRGACYYPLVAMARDNNWDIEG 385
                          ****************************************************************************************** PP

              FLO_LFY 358 vfnahprLsiWYvPtkLrqLChlersk 384
                          +fn++++L+iWYvPtkLrqLCh+e+ k
  Mapoly0113s0034.2.p 386 LFNRNEKLRIWYVPTKLRQLCHVEKVK 412
                          ************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016989.4E-13164410IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDPRLDHSRM DPRMDPRLDP RMEPRMDPRM DARSMDPRLE QRMDGRMMQP SADNRSFEFG  60
FTTAGGRREV RTLEDLFHGY GVRIATLAKM TEMGFTVSTL VNMTEAELDD VIQTISDILQ  120
MELLVGERYG IKSAVRAEKK HLEEELERQR LELLTKSERK RKLDEVTSAL VTKEGTVSEQ  180
RRESAMMMPE SIAPVNALNL NSKEPPLLMG AGHSSLTPGL LALAENSSDS EDKRLGKKKQ  240
KRRRPKEHGE DGEDRPREHP FIVTEPGEAA RGKKNGLDYL FDLYEQCGKF LEQVQQLARE  300
KGEKCPTKVT NQVFRHAKHT GAGYINKPKM RHYVHCYALH CLDIDQSNAL RKLYKERGEN  360
VGAWRGACYY PLVAMARDNN WDIEGLFNRN EKLRIWYVPT KLRQLCHVEK VKYGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A1e-1022474144171FLORICAULA/LEAFY HOMOLOG 1
4bhk_B1e-1022474144171FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2860560.0AF286056.1 Marchantia polymorpha Marpoflo protein (MarpoFlo) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966714.21e-142floricaula/leafy-like protein FL1
RefseqXP_002978027.11e-142floricaula/leafy-like protein FL1
SwissprotO044071e-170NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLA0A2R6WBS70.0A0A2R6WBS7_MARPO; Uncharacterized protein
STRINGEFJ206841e-141(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-85floral meristem identity control protein LEAFY (LFY)