PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0111s0035.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 759aa    MW: 81988.4 Da    PI: 7.8099
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0111s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-11122147126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++++lC+f++ t tC++G +CkF H+
  Mapoly0111s0035.1.p 122 PGEKLCSFYMTTRTCSFGVTCKFDHP 147
                          5789*********************8 PP
2zf-CCCH36.39.6e-12180206127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++ G+CkyG rCkF+H++
  Mapoly0111s0035.1.p 180 PGEPNCSFYMKRGECKYGQRCKFNHPK 206
                          5789*********************96 PP
3zf-CCCH37.34.4e-12296321227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++ +C f+++tG CkyG++C+F+H++
  Mapoly0111s0035.1.p 296 GENECTFYLKTGSCKYGATCRFNHPE 321
                          5679********************96 PP
4zf-CCCH38.12.6e-12636660327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + C+++++tG+C++G++CkF+H+p
  Mapoly0111s0035.1.p 636 DPDCSYYLKTGECSFGASCKFHHPP 660
                          589********************97 PP
5zf-CCCH35.31.9e-11684708327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +  C ++++tG CkyG++C+F H+p
  Mapoly0111s0035.1.p 684 ETMCAYYLKTGACKYGSTCRFDHPP 708
                          568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.98E-5120147IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072121148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38121149IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8123147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4125146IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5179206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962179207IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9181206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5183208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5185209IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08294322IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5298321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5300320IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6633660IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84633661IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9636660IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5638661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4639658IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5681708IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253681709IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6684708IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-6686706IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8687708IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MASSAAPQMY PPQQMQQAQQ YQAQLGYTNP YQAAAPASYN HIVPAYGQVP TSTQPQHLGG  60
GQQQQQQQQQ QQQQQQQHSY AYDSSSNGLK RSSDEALQSV DLYSKRPRPD SAGTVAFYPQ  120
RPGEKLCSFY MTTRTCSFGV TCKFDHPAWV PFGGIPNWKE VTSSGNAASA TDPANLPQRP  180
GEPNCSFYMK RGECKYGQRC KFNHPKERRE TSADSAGSSK EEGSQGAQNE AATKNTGGGV  240
NGTAGANGTS ANNGTTATST SKTTSGGVQM KGHSMGDRGS AKSAPLNSKG LPLRQGENEC  300
TFYLKTGSCK YGATCRFNHP EIPSRRTGAP VPTQSHQSPN VMPQMPYAAT GSYPSQIQLT  360
NMGQQVTYAT ADMKSHDSQA VAAAYYQQWQ CQTALAETKP NEMSAVNISS YQQQWQTAPT  420
QTDAKAGDSS ASKLPTYTQH WQYPQPVQTE MKVSDASNTL TTQYQQQWSC TPQTDARVND  480
ASALGTTAMQ QQWHGYGSAS YGDATSTLAA SQYQQQWQCP LGQTDTRVND VTGLALGSSP  540
YQQHWQCPQT QADVTVSAGQ ATGTTPYQWS YLPQQANVKV AEGTPIVMAQ YQQQWKYMPE  600
QTPINDALSV ETSPPVKVDP GGAILPVSPH PQRPGDPDCS YYLKTGECSF GASCKFHHPP  660
GRVPTIPRVA PKLTLAGLPR REGETMCAYY LKTGACKYGS TCRFDHPPPG EAAAKLAAEP  720
AEAAKLDTVD SDATDTPEIQ ETKQICNQPA KPAKSMQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WCB30.0A0A2R6WCB3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.17e-36floral homeotic protein (HUA1)