PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0110s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 131aa MW: 14850.5 Da PI: 7.55 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.8e-07 | 60 | 81 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r+H Mapoly0110s0001.1.p 60 FCELCGKGFKRDANLRMHMRSH 81 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.57E-7 | 56 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-7 | 56 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.632 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.0E-5 | 59 | 81 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0014 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MFPSNSASGS HGSEDQEMGV RSRRGASRYE FDDGEGENLV DGYQLVELDG QEILAEHTHF 60 CELCGKGFKR DANLRMHMRS HGDEYKTPEA LARPQKPIDE QTPEIPKRFS SPHVGCKRNV 120 RFCVRLRSRR * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022018788.1 | 6e-32 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Refseq | XP_027091971.1 | 7e-32 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 | ||||
Refseq | XP_027094878.1 | 7e-32 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 | ||||
Refseq | XP_027094902.1 | 7e-32 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 | ||||
Refseq | XP_027168469.1 | 7e-32 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X2 | ||||
Swissprot | Q9C8N5 | 5e-30 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2R6WCC3 | 5e-92 | A0A2R6WCC3_MARPO; Uncharacterized protein | ||||
STRING | XP_010256329.1 | 3e-31 | (Nelumbo nucifera) | ||||
STRING | EFJ14225 | 1e-32 | (Selaginella moellendorffii) | ||||
STRING | EFJ20089 | 1e-32 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 6e-33 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0110s0001.1.p |