PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0103s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LSD | ||||||||
Protein Properties | Length: 120aa MW: 12657.5 Da PI: 7.3565 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.9 | 7.8e-14 | 25 | 49 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL YP+G+ +VRCalC +V Mapoly0103s0036.1.p 25 CGGCGTLLVYPYGSNHVRCALCSFV 49 **********************988 PP | |||||||
2 | zf-LSD1 | 41.7 | 1.9e-13 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+YP+GA +V+C++C+++ Mapoly0103s0036.1.p 58 CGSCGLLLMYPAGAHAVKCSSCQFI 82 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.8E-11 | 22 | 50 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.4E-12 | 25 | 49 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.2E-10 | 55 | 83 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-10 | 58 | 82 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MSGTLIPYPT QQQQQHQHQQ CQLYCGGCGT LLVYPYGSNH VRCALCSFVT NAPAHLNCGS 60 CGLLLMYPAG AHAVKCSSCQ FITCLAPQTQ TVIVENPMTL DDSGQLVSSV AVGITTKHA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009108471.1 | 7e-27 | PREDICTED: protein LSD1-like isoform X2 | ||||
TrEMBL | A0A2R6WDZ0 | 1e-80 | A0A2R6WDZ0_MARPO; Uncharacterized protein | ||||
STRING | Bra020924.1-P | 5e-26 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 6e-22 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0103s0036.1.p |