PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0101s0006.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ARR-B
Protein Properties Length: 580aa    MW: 63243.4 Da    PI: 6.3848
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0101s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.1e-28218271155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ eLH++Fv+av+qL G++kA+Pk+ile+m+v+gL++e+v+SHLQkYR 
  Mapoly0101s0006.1.p 218 KARVVWSVELHQQFVNAVNQL-GIDKAVPKRILEIMNVQGLSRENVASHLQKYRQ 271
                          68*******************.********************************6 PP
2Response_reg861.1e-28471551109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l++ +y +v++++++ +al ll+e++  +Dl++ D+ mp+mdG++ll+ i  e  +lp+i+++a+ge e + +
  Mapoly0101s0006.1.p  47 VLVVDDDPVCLMILETMLRQCHY-SVTTCQKAVDALSLLRENKsnYDLVMSDVYMPDMDGFKLLEAIGLEL-DLPVIMMSANGETEVVMK 134
                          89*********************.***************888888**********************5544.6***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +eel++
  Mapoly0101s0006.1.p 135 GITHGACDYLLKPVRIEELRN 155
                          *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.7E-4244194No hitNo description
SuperFamilySSF521725.41E-3745164IPR011006CheY-like superfamily
SMARTSM004486.9E-3445157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.76546161IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2547156IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.20E-3148161No hitNo description
PROSITE profilePS5129410.186215274IPR017930Myb domain
SuperFamilySSF466892.33E-18216275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-28217275IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24218271IPR006447Myb domain, plants
PfamPF002493.3E-7220270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MMKSFDTATS TSTSAGRSPD SSTTGDKLNP NDKMTIVEGF SPIGLKVLVV DDDPVCLMIL  60
ETMLRQCHYS VTTCQKAVDA LSLLRENKSN YDLVMSDVYM PDMDGFKLLE AIGLELDLPV  120
IMMSANGETE VVMKGITHGA CDYLLKPVRI EELRNIWQHV IRRRGRGETM KDDHSSEWGD  180
DGNRALDSPN DGEQNSRKRK EKQEPVEEPL EDVNSLKKAR VVWSVELHQQ FVNAVNQLGI  240
DKAVPKRILE IMNVQGLSRE NVASHLQKYR QYMKRLSGVN TPGHLDAQPA ALSDLRAKFP  300
FWLQKYRQYL KRLSGVNTQP YPVASFQASQ GTNFGGTMQI QPGGRGVAAA SCGKPMNVLP  360
GPGSNLVGAG MARGITQIDQ ATLTTLAQLQ AHQQRQAASI SSPHMLGGLG QLSVGGIRPG  420
LSNPSSNNTS FPGLQRMSSV ELDMLMKAAQ QDSINNRQQG NMNGDDLVGL GRQNNLHPLP  480
ALGFKTEDEL VLPSIGLSQV FGAEKFGVEL GAPSPYSTMS STMSSRGFQE ANYSSGYSDY  540
GHVDNNNFLP ASPSELSVSL LNQVFPHQGE DDYRPGQGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19217277464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201RKRKEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380962.11e-132two-component response regulator ORR22-like
RefseqXP_024388632.11e-132two-component response regulator ORR21-like isoform X1
TrEMBLA0A2R6WEC10.0A0A2R6WEC1_MARPO; Uncharacterized protein
STRINGPP1S31_291V6.11e-132(Physcomitrella patens)
STRINGPP1S42_161V6.11e-132(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-98response regulator 1