PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Mapoly0099s0053.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 528aa MW: 59273.8 Da PI: 9.5027 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.8e-07 | 8 | 31 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ +C+FaHg Mapoly0099s0053.7.p 8 YKTKLCTLYQR-GNCPR-QSCSFAHG 31 9**********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-11 | 6 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.04E-5 | 7 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-4 | 7 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-5 | 8 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 528 aa Download sequence Send to blast |
MAHARDLYKT KLCTLYQRGN CPRQSCSFAH GDAELRRFSG GGGYLGRQEN HRSGDLWDRL 60 DRRRSPLHRR RSLSREGRGG RQSNPSGRRF SPRDRGRSRS RSSLRRSRTS RSVSPEKSPS 120 YKSDRRETKR MKLEPLDVHL SDVSDHYVGD VKFEEEDNAR SSARSPSPSP RDAIYEQLCQ 180 IQLENEVMVT NKSKLEKYLE KMKEEQGVTL AKNTELESKL STSQEEIRRW NNKVKKLVKL 240 YMRNVRAQEE VKKSQARLQK FAEDLSTEET HRLSTHGEDS DFYNLSDVEP DRLTNGAKAE 300 GSFACHAMDV DTEGNASVQN GPTGFYYSAS GAPGEAPGDV DTSQLHDSVA IAKKKRLHAV 360 REKTRALTRN MQQNGGNIRL KSNEEEGHPD PEMTPALTSP GGSEKPSKVD MFMATEAGAG 420 KERMAGDDLS LSLRSSPVEK VRPIRSTLML FAVKSRDVRS SLPSTGLAAH AGDFQHDTEL 480 EEDMTYRGNE RGSRNPNLDL ELGKSYQIDA DCSYRISSPQ YPVSTLP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WEZ9 | 0.0 | A0A2R6WEZ9_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21810.1 | 8e-09 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Mapoly0099s0053.7.p |