PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0099s0053.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 445aa    MW: 50012.6 Da    PI: 9.9688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0099s0053.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07831126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ykt+lC  ++r G C++  +C+FaHg
  Mapoly0099s0053.2.p  8 YKTKLCTLYQR-GNCPR-QSCSFAHG 31
                         9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.7E-11637IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.47E-5736IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-4732IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488733IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5831IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAHARDLYKT KLCTLYQRGN CPRQSCSFAH GDAELRRFSG GGGYLGRQEN HRSGDLWDRL  60
DRRRSPLHRR RSLSREGRGG RQSNPSGRRF SPRDRGRSRS RSSLRRSRTS RSVSPEKSPS  120
YKSDRRETKR MKLEPLDVHL SDVSDHYVGD VKFEEEDNAR SSARSPSPSP RDAIYEQLCQ  180
IQLENEVMVT NKSKLEKYLE KMKEEQGVTL AKNTELESKL STSQEEIRRW NNKVKKLVKL  240
YMRNVRAQEE VKKSQARLQK FAEDLSTEET HRLSTHGEDS DFYNLSDVEP DRLTNGAKAE  300
GSFACHAMDV DTEGNASVQN GAPGEAPGDV DTSQLHDSVA IAKKKRLHAV REKTRALTRN  360
MQQNGGNIRL KSNEEEGHPD PEMTPALTSP GGSEKPSKVD MFMATEAGAG KERMAGDDLS  420
LSLRSSPVEK VHAKVANEQS TSKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WEX30.0A0A2R6WEX3_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.14e-09C3H family protein