PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0099s0053.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 528aa    MW: 59273.8 Da    PI: 9.5027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0099s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-07831126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ykt+lC  ++r G C++  +C+FaHg
  Mapoly0099s0053.1.p  8 YKTKLCTLYQR-GNCPR-QSCSFAHG 31
                         9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.9E-11637IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.04E-5736IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488733IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-4732IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-5831IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAHARDLYKT KLCTLYQRGN CPRQSCSFAH GDAELRRFSG GGGYLGRQEN HRSGDLWDRL  60
DRRRSPLHRR RSLSREGRGG RQSNPSGRRF SPRDRGRSRS RSSLRRSRTS RSVSPEKSPS  120
YKSDRRETKR MKLEPLDVHL SDVSDHYVGD VKFEEEDNAR SSARSPSPSP RDAIYEQLCQ  180
IQLENEVMVT NKSKLEKYLE KMKEEQGVTL AKNTELESKL STSQEEIRRW NNKVKKLVKL  240
YMRNVRAQEE VKKSQARLQK FAEDLSTEET HRLSTHGEDS DFYNLSDVEP DRLTNGAKAE  300
GSFACHAMDV DTEGNASVQN GPTGFYYSAS GAPGEAPGDV DTSQLHDSVA IAKKKRLHAV  360
REKTRALTRN MQQNGGNIRL KSNEEEGHPD PEMTPALTSP GGSEKPSKVD MFMATEAGAG  420
KERMAGDDLS LSLRSSPVEK VRPIRSTLML FAVKSRDVRS SLPSTGLAAH AGDFQHDTEL  480
EEDMTYRGNE RGSRNPNLDL ELGKSYQIDA DCSYRISSPQ YPVSTLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WEZ90.0A0A2R6WEZ9_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP51641215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.18e-09C3H family protein