PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0097s0070.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

C3H

Protein Properties

Length: 2002aa MW: 216017 Da PI: 10.3368

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0097s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.4e-06	1848	1869	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++a+tG+C+ ++CkF+H++ Mapoly0097s0070.1.p 1848 CPTHAATGECSDQATCKFHHPK 1869 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.083	1738	1766	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.793	1738	1767	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	13	1767	1791	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.024	1771	1792	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.012	1793	1818	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.249	1793	1819	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.089	1820	1847	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.025	1820	1846	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.8	1847	1869	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.521	1848	1870	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2002 aa Download sequence Send to blast
MRDSDLVIRY GARQSAAARA QEGAADASIP PGFQSVIMSC KRPRDEDGEF DRPQRLQHQR 60 PRRPPDPDLQ PQPQPQQQPQ ALYGSSRFVD EDHEEGQVTP PQSSIPAYHR AEPLGPPGFY 120 RPELEAASRR LTPTPAPAPP SQEPPSAIAP PFQDGRDPLL LRPRSSASRP PGASRASSAG 180 GGAGGGSDAG LPSRPCSSRG VGVGAGAAGA RILVVESPPP SRRALPPPPP PPLPLPPAPL 240 SSRLLSSLDS PTRRPPSPTS SSRPGRDLES FLGAGPFKGE ILVPKRERKD DRSIDQQQQQ 300 QQQQRLSFGG VEANASDASH VRRRAGKDSD PRSSSSSRHA EARALERAER ADRDYEVSER 360 RKRPHRHHHH HHHHDEEQLQ ERAVRHHFST RKSRILPDPD GRPSKGSRLD DGLKLKSARH 420 AASTAKDGRE AREMTISVHK HGQRTVKVED SSKSRAHVGR HSHHHYHERA GLRDGGSDSA 480 IKDIERLSEN RSKECDQLLL SSSSSSLAGQ DRGLVGSQLS KEPGNSRHSR GSSPSPQERQ 540 ALLPPHQIKK EIIPLSDAHG EPELRPRAPV LSRLSTPKPP DSSLAPKPRL RAEMLGHDKN 600 NSKAVLASAS SGAPPPHTTK SVGGKVKSDR LVVVDGGSER PLVSKQVVAS LGAVVVVEEK 660 TSTTPTSLRT LSGKAGKVQA TREELNSQLS ARLLKLQIPD GSKGDSDEAV QTRYPSISIS 720 PNGIKNVYSP LQKVGPSDNL LRDSRNIMMH KAADNLQLRL EGPGGLSTAD LLAPSAPVTA 780 TDLSIEVTEQ SPGCRPAPKL IFTGHKSDQS SKEASSPQAD LQLKEFPGLV GPRISESAKM 840 SLEKPDCRKC IAPMLSKVPL ADTARRLELT EARNRTSQFI VAPEGSPGSP QWNVFENKMR 900 SFAKHCETLR KPSAGPSILS MCLPSVQPVI KSLREPAELA EFSQALSLST TSDVSGVFEK 960 EKEVRNLAIV NHFRGHEEEK AELTLVTPSA PKEVRLFGAN LVAPVLERVE PSSKTMDAVV 1020 KPVKPAEPEI RTVLAVAAAA AEDVQPADPS QRIKEPAAPQ DTAVAQAAEA VSCMGTIEEA 1080 VHAKNLAETK EQSSLSLEDP QLADPIAPQD ASEVQAQSSE VNLQQEKQVV TAAPLPKGAP 1140 PIVRQQSSSR VAGAHTWLRC GGTSSATPAN SVMGFRSTPS ATGGVPQPAV ARGRGTQGAA 1200 YVRKGNSLVR APGAVTLPSG APPPSMLGQM RPTMVNQGPS QKPPIFRNTF FPTHDNAKSL 1260 QPALRKSLVP SSESAGAIAP VPRSAIVPSG GLSQGNNGPV SETGISSGRP KTPPQGALGV 1320 GSLMKTGFVL SASTLPQIGT GSRLQIPVGD DFGDNIAEAS NTSPGAKTLP VVIPSNSVNL 1380 LPGPNNMVYV RRKANQLVVA PCPQPVDMSL AENQAANKQL MPDLYIKRKT NQLVRNSVLK 1440 GNGNSSFVQA LLGNGPPKDL TEQGSRNSIL YKKMRLGRVL RQKKGLTGRS SWVWTLSGAT 1500 VSHDLDTSSG HVRKPAPSLF PWKRHSLTTS IRSRRNRTLP EGKKGSLLFV MSERLRRVRP 1560 VQPVYTRSAD GFSLHRSGVM SLGGGNLKWT KSLEKRAKLA SEAATKAVAA AESRKREKKD 1620 AVVDAVVKAK SDRRVTRKAA KGAGERIVWV GLVRYKMDAS SKTLQRIPDT KEESETAMSS 1680 GPTKTLPLLT PRRSYIGGTV YLRVGNGNQL VRDPKAASQA LASEKVRWSL HHARSRGAKK 1740 QQYCQFFTRF GKCNKENGKC IYIHDPDKVA VCTKFLKGNC TDEQCLLTHK VIPERMPDCS 1800 FFLEGLCTNE SCPYRHVNVN PKAPYCDGFL RGYCKDGEKC NKKHTYVCPT HAATGECSDQ 1860 ATCKFHHPKK KGKVEIAITR KLGLKRKRRY FCSTDSETGG KSVNENCAAA SSVPEDDLPV 1920 KEEKVVDEEL AEFISLANTE EQDGDTKVSP ETQKPWSSFT RPGVPSFIRK ETVEEESGSA 1980 EEVERWIKPT FLFKVTSPAA S*

Sequence ? help Back to Top

Protein Sequence Length: 2002 aa Download sequence Send to blast

MRDSDLVIRY GARQSAAARA QEGAADASIP PGFQSVIMSC KRPRDEDGEF DRPQRLQHQR  60
PRRPPDPDLQ PQPQPQQQPQ ALYGSSRFVD EDHEEGQVTP PQSSIPAYHR AEPLGPPGFY  120
RPELEAASRR LTPTPAPAPP SQEPPSAIAP PFQDGRDPLL LRPRSSASRP PGASRASSAG  180
GGAGGGSDAG LPSRPCSSRG VGVGAGAAGA RILVVESPPP SRRALPPPPP PPLPLPPAPL  240
SSRLLSSLDS PTRRPPSPTS SSRPGRDLES FLGAGPFKGE ILVPKRERKD DRSIDQQQQQ  300
QQQQRLSFGG VEANASDASH VRRRAGKDSD PRSSSSSRHA EARALERAER ADRDYEVSER  360
RKRPHRHHHH HHHHDEEQLQ ERAVRHHFST RKSRILPDPD GRPSKGSRLD DGLKLKSARH  420
AASTAKDGRE AREMTISVHK HGQRTVKVED SSKSRAHVGR HSHHHYHERA GLRDGGSDSA  480
IKDIERLSEN RSKECDQLLL SSSSSSLAGQ DRGLVGSQLS KEPGNSRHSR GSSPSPQERQ  540
ALLPPHQIKK EIIPLSDAHG EPELRPRAPV LSRLSTPKPP DSSLAPKPRL RAEMLGHDKN  600
NSKAVLASAS SGAPPPHTTK SVGGKVKSDR LVVVDGGSER PLVSKQVVAS LGAVVVVEEK  660
TSTTPTSLRT LSGKAGKVQA TREELNSQLS ARLLKLQIPD GSKGDSDEAV QTRYPSISIS  720
PNGIKNVYSP LQKVGPSDNL LRDSRNIMMH KAADNLQLRL EGPGGLSTAD LLAPSAPVTA  780
TDLSIEVTEQ SPGCRPAPKL IFTGHKSDQS SKEASSPQAD LQLKEFPGLV GPRISESAKM  840
SLEKPDCRKC IAPMLSKVPL ADTARRLELT EARNRTSQFI VAPEGSPGSP QWNVFENKMR  900
SFAKHCETLR KPSAGPSILS MCLPSVQPVI KSLREPAELA EFSQALSLST TSDVSGVFEK  960
EKEVRNLAIV NHFRGHEEEK AELTLVTPSA PKEVRLFGAN LVAPVLERVE PSSKTMDAVV  1020
KPVKPAEPEI RTVLAVAAAA AEDVQPADPS QRIKEPAAPQ DTAVAQAAEA VSCMGTIEEA  1080
VHAKNLAETK EQSSLSLEDP QLADPIAPQD ASEVQAQSSE VNLQQEKQVV TAAPLPKGAP  1140
PIVRQQSSSR VAGAHTWLRC GGTSSATPAN SVMGFRSTPS ATGGVPQPAV ARGRGTQGAA  1200
YVRKGNSLVR APGAVTLPSG APPPSMLGQM RPTMVNQGPS QKPPIFRNTF FPTHDNAKSL  1260
QPALRKSLVP SSESAGAIAP VPRSAIVPSG GLSQGNNGPV SETGISSGRP KTPPQGALGV  1320
GSLMKTGFVL SASTLPQIGT GSRLQIPVGD DFGDNIAEAS NTSPGAKTLP VVIPSNSVNL  1380
LPGPNNMVYV RRKANQLVVA PCPQPVDMSL AENQAANKQL MPDLYIKRKT NQLVRNSVLK  1440
GNGNSSFVQA LLGNGPPKDL TEQGSRNSIL YKKMRLGRVL RQKKGLTGRS SWVWTLSGAT  1500
VSHDLDTSSG HVRKPAPSLF PWKRHSLTTS IRSRRNRTLP EGKKGSLLFV MSERLRRVRP  1560
VQPVYTRSAD GFSLHRSGVM SLGGGNLKWT KSLEKRAKLA SEAATKAVAA AESRKREKKD  1620
AVVDAVVKAK SDRRVTRKAA KGAGERIVWV GLVRYKMDAS SKTLQRIPDT KEESETAMSS  1680
GPTKTLPLLT PRRSYIGGTV YLRVGNGNQL VRDPKAASQA LASEKVRWSL HHARSRGAKK  1740
QQYCQFFTRF GKCNKENGKC IYIHDPDKVA VCTKFLKGNC TDEQCLLTHK VIPERMPDCS  1800
FFLEGLCTNE SCPYRHVNVN PKAPYCDGFL RGYCKDGEKC NKKHTYVCPT HAATGECSDQ  1860
ATCKFHHPKK KGKVEIAITR KLGLKRKRRY FCSTDSETGG KSVNENCAAA SSVPEDDLPV  1920
KEEKVVDEEL AEFISLANTE EQDGDTKVSP ETQKPWSSFT RPGVPSFIRK ETVEEESGSA  1980
EEVERWIKPT FLFKVTSPAA S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	3e-17	1744	1869	41	168	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	3e-17	1744	1869	41	168	Cleavage and polyadenylation specificity factor subunit 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1868	1888	KKKGKVEIAITRKLGLKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6WFH2	0.0	A0A2R6WFH2_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4573	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	9e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	Mapoly0097s0070.1.p