PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0096s0058.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 422aa    MW: 46234.1 Da    PI: 6.9821
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0096s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed++lv +++++G g+W++ +++ g+ R++k+c++rw +yl
  Mapoly0096s0058.1.p 14 KGPWTPDEDQKLVAYIQRHGHGSWRALPKHAGLLRCGKSCRLRWTNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rgr++ +E++l++++++ lG++ W++Ia+++  gRt++++k++w+++l
  Mapoly0096s0058.1.p  67 RGRFSLDEEQLIIHLHAILGNR-WSAIAAHLA-GRTDNEIKNYWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.485961IPR017930Myb domain
SuperFamilySSF466895.99E-3011108IPR009057Homeodomain-like
SMARTSM007171.4E-141363IPR001005SANT/Myb domain
PfamPF002497.4E-171461IPR001005SANT/Myb domain
CDDcd001676.14E-121661No hitNo description
PROSITE profilePS5129425.94662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2665116IPR009057Homeodomain-like
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.5E-1567112IPR001005SANT/Myb domain
CDDcd001672.23E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGRAPCCDKQ GLKKGPWTPD EDQKLVAYIQ RHGHGSWRAL PKHAGLLRCG KSCRLRWTNY  60
LRPDIKRGRF SLDEEQLIIH LHAILGNRWS AIAAHLAGRT DNEIKNYWNT HLKKRLLHMG  120
IDPVTHKATQ SPPLLCSKLS HLAQWDSARL EAEARLARRT SPDSFLRSWK AQASGPLRSD  180
LPSVQLPSFV QHWEPSMQSQ LTSNEFSRSS TATSSPTASS LDFDSAGAAL LLNHLSSMSG  240
ANTTQINHME TLMSPTSTLR PFDGQDSSYS SPDSMVNGEA LLQCERLIQN SSSTAVTSFP  300
SLMSESSMFP SNGGFVDEGV NPPTSLWQQP LVQLDSAIPS VSDGRSCSVL SEDESSSSYG  360
SLLPPEMLLD LVDSAMASNK SEPSVGSWPD VGQMASKDYW SNMLKLVGPP CQEMPVAVME  420
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398171.16e-96transcription factor MYB53-like
TrEMBLA0A176VU570.0A0A176VU57_MARPO; Uncharacterized protein
TrEMBLA0A2R6WFU00.0A0A2R6WFU0_MARPO; Uncharacterized protein
STRINGPP1S106_224V6.12e-95(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-81myb domain protein 16