PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0093s0028.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | HB-other | ||||||||
Protein Properties | Length: 905aa MW: 99703.1 Da PI: 5.9009 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.3 | 9.6e-07 | 858 | 896 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lF++ n++p++e++ +A+ ++te+qV++ F N Ra+ Mapoly0093s0028.3.p 858 LFQNfqNPNPTRETKLMIATMFNITEKQVTNHFVNLRAR 896 577555********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0066 | 839 | 904 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-16 | 843 | 900 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.29E-5 | 843 | 896 | No hit | No description |
SuperFamily | SSF46689 | 1.84E-10 | 843 | 900 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.1E-8 | 857 | 896 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 905 aa Download sequence Send to blast |
MVYVANPLET DKSIEHSQKQ EDQPAAPGID SMSRASKEVP RSTVKESESS DLQTQRSAGP 60 VQAVPELHRI LDSTNELWRL RGGAVNNHPT EVICVPDGER TAVPQISPSD YLNGTAKENV 120 NYINWYQHGL TNSMPTGRIV TCYAGNNPSD SSTRGETGRN VDISVLTSFH KVSSEEKWDA 180 QALYGDVYSD DPLFHIVPSA CPGTASGAVA CSEIEPKKFG IGFSTEENVC DLKGQRTIAT 240 LEGLKHDEPF AFDDYRADHF FLADPSGNQT LDNCVPELRS AFRVTNSSVA ETVSQHLIHH 300 GETSQSAVHP QEKVLPAPTS PIFQLEQYDD IMIFNHHAQQ WQDELMNLNY HEANAEGNVG 360 LTSGYKGSAT MPVLPEQPQF EAINPFPTRH AVSAPDVATD CFSFWPGEHS STYHSLEDQS 420 TPYVWPGSPT SEQALTPSYP TEAGTSSYTW KTTDSSLVTA AVDDAKPEKT ARKHGVPAEP 480 CASSGDWLES RGSPTCSMSP CAKGKQIAVS TTSQIDKISI CQRVSAEQGR TEMLEMLQTV 540 FPDSLDLSQE DNKHVRDARL AWLQEHAKED ILQNSKRDRT NSTEMLSRPT SSLRKKKQKD 600 QEIPEGRLRG TSICTDPDLS YGLAAVQNVL EDFHKSAGLI LKAKKLQNQR PSVTDLLNAE 660 LEALCIGDAL GPEVKGFIMT VIKIGHGKQP AATNPDMVEQ ILQLKWRLAS LMEESRNHER 720 STLAQLRDTF TRYSFLFPSS ASDSFDKRAI PSKYYQDLEN VVCQYFRGCS LFFKRSASSA 780 SSSSGQQGHE NSSNTGGAPD VHAKVRGPLP VEVLGEANAG TSPVVETSDR SRMASRKELS 840 GARGNLPKVA ADYMRQWLFQ NFQNPNPTRE TKLMIATMFN ITEKQVTNHF VNLRARKFRP 900 LVCS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WGH1 | 0.0 | A0A2R6WGH1_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 3e-09 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0093s0028.3.p |