PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0090s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25213.4 Da PI: 8.6564 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIrd + kr r++lg+f t+eeAa+a+++ ++++g Mapoly0090s0001.1.p 41 EYKGVRQRT-WGKWVAEIRDpW----KRIRVWLGSFNTKEEAAAAYDRKVLEFFG 90 69****999.**********77....26********************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.09E-26 | 40 | 100 | No hit | No description |
SMART | SM00380 | 4.2E-28 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-10 | 41 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-20 | 41 | 98 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.495 | 41 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-26 | 41 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLSRFKATSR QRMTKGEKVL HKKWSKASSR GRGGSENFSC EYKGVRQRTW GKWVAEIRDP 60 WKRIRVWLGS FNTKEEAAAA YDRKVLEFFG PNAHFNLQSS PAALQSNQNT VFTPLFSVPL 120 QTLISKTDSY SQPQVSEISE PLKTEAFYTN SNSNKTLDSF IPLEVKGVNK SEELPPLEVE 180 VTPLDTDFKN LDKEPYFDFA SLLDLDEVLS CRTNLSETER S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-14 | 42 | 97 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WHB4 | 1e-162 | A0A2R6WHB4_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0090s0001.1.p |