PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0086s0046.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family NAC
Protein Properties Length: 491aa    MW: 54611.5 Da    PI: 5.454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0086s0046.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1033.9e-32562011128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                          lp+G+rF+P+deel+ ++L++kv   k     +++++i+++d    i++++P++Lp  vk++ ++ +fF+k +k+y+tg+rk+r+     
  Mapoly0086s0046.3.p  56 LPAGVRFDPSDEELL-RHLAAKVGVGKevshPRIDDFISHLDgndgICQTHPENLP-GVKTDGSSRHFFHKPAKAYTTGTRKRRKihned 143
                          799************.899999987776776555666777766667**********.677888999******************845555 PP

                  NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vl+ +g++ g kk++v+y      +++ k+ekt+W++h+y+l
  Mapoly0086s0046.3.p 144 eesGVETRWHKTGKTRPVLD-GGQHLGWKKIMVLYrnlysGKKKAKSEKTNWILHQYHL 201
                          44322677************.99************6666435788889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-3748220IPR003441NAC domain
PROSITE profilePS5100533.156220IPR003441NAC domain
PfamPF023653.7E-1357201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDQLVRQIDN ATHQRNDAYS LAQDDTTALP GLEVREDCPS CGHHVGRRTA MDWVGLPAGV  60
RFDPSDEELL RHLAAKVGVG KEVSHPRIDD FISHLDGNDG ICQTHPENLP GVKTDGSSRH  120
FFHKPAKAYT TGTRKRRKIH NEDEESGVET RWHKTGKTRP VLDGGQHLGW KKIMVLYRNL  180
YSGKKKAKSE KTNWILHQYH LGPEEEERDG ELVVCKVFFQ KQPRQCTGGK QYDGVFAEGN  240
SSKAETCQPQ PRSNREIVVG ASVSDVSRGT LITPKRDAPV RPQFSRHRTR EASPPVQAPP  300
ESVTTRTPTQ SGRGSEMTVM GKSDHLTSEL TSTLGISHRL PQSLTPCVKT GSLQSGGLVQ  360
SVPFEELFSE NGSPDLYEEV STSGKSCQNE NAMAAVEYPP RDDYHEQPYP VMDTEGNVIG  420
LTDLECDEEL LPISWDWDAN LDIEGGGGVD GLLDTPYHFN PHTDYFYTFD EYLLRPEINF  480
PGSIGSDEEY *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WIP70.0A0A2R6WIP7_MARPO; Uncharacterized protein
TrEMBLA0A2R6WIR20.0A0A2R6WIR2_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.12e-79NAC domain containing protein 73