PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0084s0032.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

LBD

Protein Properties

Length: 142aa MW: 15303.4 Da PI: 8.2027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0084s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.6e-40	13	109	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfpa+qp kfanvh++FGasnv+k+l++lpe+ r da++sl++eAear++dPvyG+ g i+ q+++ +l Mapoly0084s0032.1.p 13 PCAACKFLRRKCTAECVFAPYFPADQPLKFANVHRIFGASNVTKILQDLPESSRADAVTSLAFEAEARMKDPVYGCSGAISLTQRRILEL 102 7***************************************************************************************99 PP DUF260 91 kaelall 97 + e+++l Mapoly0084s0032.1.p 103 QGEVQEL 109 9998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.114	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-40	13	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSLTSGATSS SSPCAACKFL RRKCTAECVF APYFPADQPL KFANVHRIFG ASNVTKILQD 60 LPESSRADAV TSLAFEAEAR MKDPVYGCSG AISLTQRRIL ELQGEVQELL DQVNYLEDKK 120 RKRLTQGSSG TPNPSTVVND G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-46	9	106	7	104	LOB family transfactor Ramosa2.1
5ly0_B	4e-46	9	106	7	104	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292048.2	2e-49	LOW QUALITY PROTEIN: LOB domain-containing protein 25, partial
Refseq	XP_010528230.1	2e-49	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	3e-49	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2R6WJD0	1e-100	A0A2R6WJD0_MARPO; Uncharacterized protein
STRING	XP_010528230.1	8e-49	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-50	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Mapoly0084s0032.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]