PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0080s0093.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HB-PHD
Protein Properties Length: 798aa    MW: 87784.5 Da    PI: 5.4562
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0080s0093.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.2e-09639688654
                          S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox   6 tftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          ++ ++ +e L ++F + +  p++  +e LA+klg++ +q+  WF+N R  
  Mapoly0080s0093.3.p 639 RLPDNAVEMLRQEFDSgTCFPTRVYKETLAEKLGISYQQICSWFKNARHA 688
                          55567899*******99******************************975 PP
2PHD422.1e-14320374150
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ C++  ++ +++++lCdg C++ fH++Cl+++l ++++p g   wlC+ C++
  Mapoly0080s0093.3.p 320 FCAKCKSqdAHIDNDIILCDGaCDRGFHQECLEPPLATADIPPGdeGWLCPVCDS 374
                          69*****55555********66********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-14310378IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.0E-13316375IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.181318375IPR019787Zinc finger, PHD-finger
CDDcd155041.38E-30320372No hitNo description
SMARTSM002491.8E-9320373IPR001965Zinc finger, PHD-type
PfamPF006287.3E-12320374IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590321372IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.34E-8629691IPR009057Homeodomain-like
PROSITE profilePS5007111.596631692IPR001356Homeobox domain
SMARTSM003897.3E-7634696IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-11635704IPR009057Homeodomain-like
CDDcd000866.05E-6635690No hitNo description
PfamPF000462.6E-6640688IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MPAARSQGAK GSLGAKENAD GDQNGADGQS LVVQERGRPR KSVKRAAEST SQTLTGVVVK  60
KPLGRPRKRP KLQATEDVPI EPVEGNETEP QQTISKSPPA NGTVKIPRKR NGQKSKRKVT  120
KTLLVNGKKL GGSSEALESS ETPGRLRRRR ASKECKESEG HDEGQGKENG SKNLRSHVKA  180
SNRTGTSKGA SAAGSSEDNN EGEQDDDSGK QRKRRRKRRK SGMHSQVDDK LRIKRRVKNL  240
VNRIRQEQNF IDAYAGEGWK GQSREKIRPE KELQRAESQI LRCKLAIRES IHELDNLGLE  300
GSLQQSAFDE EGRIFHEEIF CAKCKSQDAH IDNDIILCDG ACDRGFHQEC LEPPLATADI  360
PPGDEGWLCP VCDSKVECLN YMNGYMGTEF QVEDQWEDLF AEDAEKAAGG CTSNAMEEDW  420
PSEDSEDDDY DPERAKVIKD NKDDKDEDDE EKKLADSLDS SSDSGSESEA TSGSAASSDD  480
DSDNSLVSGD ELAHQGKRRQ RKDGEGRTPV NEDVDANTQD HANILAAEEE EVAAVSGKRQ  540
RKPVDYKKLH DEMFGKADVD DDDQPSEDEE WGPGRGRRRG RAEAVNGGVK PDTNGAETGK  600
EMAKEPKRRN RRKSTSAQVA NGQQALSGQQ SDDGKTYRRL PDNAVEMLRQ EFDSGTCFPT  660
RVYKETLAEK LGISYQQICS WFKNARHAAK IGMGHNSSPK MSRKKENATS ELFGSGDGGM  720
DEIEVTNGIL VEKLDEVHLK LQQLKHTLEA IISTSETSNG NRHTGIPADG IPENGVVLPN  780
GRRVVYVPVA EVIEKES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211215RKRRR
2211219RKRRRKRRK
3213219RRRKRRK
4605611PKRRNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WKX60.0A0A2R6WKX6_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.13e-69Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain