PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0078s0012.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 784aa    MW: 85472 Da    PI: 6.6735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0078s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.3e-0994118227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt+lC++f++ G C++Gd C++aHg+
  Mapoly0078s0012.1.p  94 KTSLCSYFRK-GNCRHGDLCRYAHGE 118
                          9*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.98E-789123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1291123IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-692118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.10892119IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-794118IPR000571Zinc finger, CCCH-type
SuperFamilySSF549283.29E-6178249IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd005903.82E-5181241No hitNo description
Gene3DG3DSA:3.30.70.3302.1E-5184242IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168750.458288783IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533354.89E-46290316IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.89E-46348475IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.89E-46507635IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.0E-63534721IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.2E-18542717IPR010280(Uracil-5)-methyltransferase family
CDDcd024401.72E-6581643No hitNo description
SuperFamilySSF533354.89E-46669722IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300677709IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1504.0E-63758783IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533354.89E-46767783IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MGKREGKSSK RSKPEVEEET NAADEARSQP AIAEEPPAKQ PKTEHGGQDD KSSSVSAASE  60
PNPAAEQSDE VGKMSSKALP ADLSGVVANV PRMKTSLCSY FRKGNCRHGD LCRYAHGEAE  120
LKPRPDGSWD PTSDFAKSLA RDALPVPAAV KLVAPISVAE EAAEDDSSEI TIKKCITPVQ  180
PRWSNDDLKK FLTDMNISFV TAKKRRGDRT AFVGFQDEDQ VASAIKIFDS IKEGGRKMQV  240
KDVLPRTWER NAENVSAVDD VMADADNDEG MEAAKPGVTI RVKNICDAVT PLGHLTYEEQ  300
LNIKREDVTQ VLKRLARNTR KGLPAGVLMP DWMIAARDNG GLPCALEGVL SSPVVDGYRN  360
KCEFSIGCAV DGTRAVGFQL GSFREGILAV AEPTDCRNVS SIARSYAAVF QKFVQISDLP  420
VWNKTNNKGF WRMLTVREGR GSLEKNAGEQ PSVSEVMLLV QVCPTGIDEE TRNVEYKKMV  480
DHLSLASSAA SPPLPLTALI VQDHTGVSNA APANAPLHAL TIPGEHPKAQ APVNYIHDHI  540
SNLKFRISPT AFFQVNTLAA ERLYSLAGDW AELTPDTLLF DVCCGTGTIG LTLAHRVGMV  600
VGIEMNQSAV ADAKQNAEIN NITNCRFVAS KAEDVMESLL REYITSEGEE ENSENEAESV  660
EKKGDKKRFK NIVAIVDPPR VGLHPVVLKT LRLHTQLRRL VYISCNPQSL LANAVELCTP  720
LSRENSTEKG SGRGNWRGLS NVGLARNRIK KMPPSTPFNP KKAMAVDLFP HTSHCEMVML  780
FER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A3e-2628878379450Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387137.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A176WS340.0A0A176WS34_MARPO; Uncharacterized protein
TrEMBLA0A2R6WL480.0A0A2R6WL48_MARPO; Uncharacterized protein
STRINGPP1S145_53V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.21e-170C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]