PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0075s0060.2.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C3H
Protein Properties Length: 817aa    MW: 89830.8 Da    PI: 4.8115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0075s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-0785106426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           +C ff++ G+C  G++C+F+Hg
  Mapoly0075s0060.2.p  85 IPCYFFSQ-GFCAKGEKCTFMHG 106
                          58******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.685635IPR000571Zinc finger, CCCH-type
SMARTSM003560.007634IPR000571Zinc finger, CCCH-type
PfamPF156631.8E-12761No hitNo description
PROSITE profilePS501039.2353763IPR000571Zinc finger, CCCH-type
SMARTSM003560.333962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77981108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-681106IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-482107IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-584106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-586107IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MDEEQLKKNT DCVYFLASPL TCKKGNDCEF RHSESARVNP RDCRYWLGGN CLNWDCPFRH  60
PPLEGRPTVA ANAAPIPGVA NKSRIPCYFF SQGFCAKGEK CTFMHGTPSL APKSSAPQRP  120
VRSGPASAIE SNDKESVPAA NGVAAKPNIE VTLETQAPAE TRPAHVGGVQ TSPRKEVRTY  180
PGTGANQNGG ARGRSEGPSS GHVGSGRLRI RQVQPGDDRV QNGMEQDEWW EESSPGFDVL  240
VDDGPEQSRY PDDSEFQSVG EGGLETGKGG SRSRVRSMRM ADDIEQYDYD YPHQYDHPYE  300
GNASYEHGGY EYSVHEQQGG YDPSGAYEHM GQRGGYSDRG GPDEMLARER LGLPMEVDVR  360
SGGGNNDHRS RLGSVKRRRP DGGPQHSSEN HSRRQRTEMP MDEYQHHQRQ QEDQQKQHEL  420
QLRQELFIQS GLRYNNHFSG RRQFEKNPVE TAGVARRALQ DIGAEVAIST TDRVQSKPGL  480
KGRSVVDNSR SGLKESEHSR ISKVSDSLGE SEGRNYMDLE GNRKTEKEVR KDPSTFAGPK  540
TLAQIKAEKR KGAVEGSSKK ESLNGSKLPL QTSSASKGAA GRSQQQSPAI FVGDAMSGDA  600
SIEERKIRLD KVVPSEVKKL TAFEGPKSLS AILKEKRKVE PEGDAKPEET SRDHLQRISP  660
SGSTMVAATG VDTGSAVESE LREVDTGIGT DLDADVEDGE LLSDDDGALK SRNDMNDEDR  720
NTYSLDRGAV ELQGTSSRDS QWQHDETANA MQTVEGGEDD IIEEPVHGSD YGDVQEDYEE  780
EVRELDVDHD EDEEAFVGLD DEEEDDFAKK LGGFFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WM840.0A0A2R6WM84_MARPO; Uncharacterized protein