PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0074s0047.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GATA
Protein Properties Length: 587aa    MW: 62056.8 Da    PI: 8.1599
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0074s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19349383135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTplWR+gpdg+k+LCnaCG++++k g+
  Mapoly0074s0047.1.p 349 CAHCSTTKTPLWRNGPDGPKSLCNACGIRHKKLGK 383
                          ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.47E-15341388No hitNo description
SMARTSM004016.6E-20343394IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.576343386IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-17347386IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.05E-15349395No hitNo description
PfamPF003201.5E-17349383IPR000679Zinc finger, GATA-type
PROSITE patternPS003440349374IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MLQAPCYPSP LVYGQSHYKK FWLRQTETED ETAVAPQHVA NCSQKFSTLS SSFSAMAGAP  60
SQTQNQAGSS KAGTPAPSAN ASLAACAKSY NDPRALALAL EPSRSTNKVV SEYDLNQYED  120
SSEPGAVDCT LSLGTVKRER AEAAVPTGVS RSGSPAFGEV AHPYYNPQAA WGAGCPSEPQ  180
ILFNNRNFPS DCTRDLYPQT TVPARQSRLA SGSQNHLYAG SVGSTIEGTK ISGFPRPKKS  240
PLFVGVEKGG AAVLTAENCA QDSYRNLAPS AIGFCRTTSW IPSLASPEAG TLEANKYCEA  300
PSAFNTGAIA SPISGQSVNG EDGRFPQRST LLDLGGNGAT SSKNTPRMCA HCSTTKTPLW  360
RNGPDGPKSL CNACGIRHKK LGKKNPSNGS SSEPGSSLPA SPQSVKFSPS KALKRKKNAQ  420
PMLGISKQSW APEEGARRNI QVEPSAQPWK RNRSSATRLE LTESMRVDTT TTETSGSEAD  480
ENETGGSSGN SCLTWQHQLL NNVITEVPSS SSVFPVVDPS ERSVDDFMKT SDAAPTTSES  540
QQKRDSSRAP VVNAEDTGSI NAEEAAMCLM KMSSGFGSHG FAPRLM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176WLY00.0A0A176WLY0_MARPO; Uncharacterized protein
TrEMBLA0A2R6WMH80.0A0A2R6WMH8_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-14GATA transcription factor 23