PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0073s0038.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 488aa    MW: 52992.6 Da    PI: 7.1074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0073s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd +l+++++++G  +W+t ++  g+ R++k+c++rw +yl
  Mapoly0073s0038.1.p 18 KGPWTREEDIRLKEYITKHGHSCWRTLPKAAGLQRCGKSCRLRWINYL 65
                         79********************************************97 PP
2Myb_DNA-binding48.22.5e-1571116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++  eE++l++ +  +lG++ W++Ia +++ gRt++++k++w+++l
  Mapoly0073s0038.1.p  71 RGNFLDEEEQLIITLQSLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 116
                          79999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-221067IPR009057Homeodomain-like
PROSITE profilePS5129416.6361365IPR017930Myb domain
SuperFamilySSF466896.36E-2815112IPR009057Homeodomain-like
SMARTSM007173.6E-111767IPR001005SANT/Myb domain
PfamPF002492.3E-131865IPR001005SANT/Myb domain
CDDcd001671.38E-92065No hitNo description
PROSITE profilePS5129426.98266120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2468121IPR009057Homeodomain-like
SMARTSM007172.8E-1570118IPR001005SANT/Myb domain
PfamPF002491.7E-1371116IPR001005SANT/Myb domain
CDDcd001675.67E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVQPIHSPCC EVKRGLRKGP WTREEDIRLK EYITKHGHSC WRTLPKAAGL QRCGKSCRLR  60
WINYLRPDLK RGNFLDEEEQ LIITLQSLLG NRWSLIAGRL PGRTDNEIKN HWNTHLKKKL  120
KSMGIDPSTH RAVIPLQSPG GSKKTSSTYL HAPSVHTGAQ NKVIKLKAQA QQRALPVAAE  180
AERAQTQQVE PGTSLYKGER VIELRDSSSS RSSEPVVVRA KNVAELAAPQ AKQAAVKLVE  240
CSVARDGVGV GATSAPSSMA ANLGHAKPAA ACSAGPFAPG HRFLESSNWP SPCEPFAAHV  300
GGCLDSPPTS SSEESHRQLL ASLDPLEYSF DQVSSGASHH HPGDGDRVAL RFVDGAALSN  360
LHIPRAAWAE TFLPILSSPS GMESSYSSPS DSPASSEDEP MTHSAPEWVM AESREMEEAE  420
TASVGLHAHE LQAPLSHNWS LAAGIALHLD GDLQLHDDAE ASDVLWNFDH ILIPDHSMHN  480
LHMHSLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27161225110B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKKKLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WMT40.0A0A2R6WMT4_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.15e-66myb domain protein 6