PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0072s0075.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 569aa    MW: 61499.4 Da    PI: 6.3018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0072s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W+++Ede+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
  Mapoly0072s0075.1.p 14 KGLWSPDEDEKLVRYIRAHGHGCWSAVPKFAGLSRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding52.98.6e-1767110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++eE++ ++++++ lG++ W+ Ia +++ gRt++++k++w++
  Mapoly0072s0075.1.p  67 RGAFSQEEEKTIIELHAVLGNR-WSQIATHLP-GRTDNEIKNYWNS 110
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.3961IPR017930Myb domain
SuperFamilySSF466891.16E-2911108IPR009057Homeodomain-like
SMARTSM007179.3E-151363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001679.82E-121761No hitNo description
PROSITE profilePS5129425.47362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2665115IPR009057Homeodomain-like
SMARTSM007179.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567110IPR001005SANT/Myb domain
CDDcd001671.43E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MPRHACCAKQ KLKKGLWSPD EDEKLVRYIR AHGHGCWSAV PKFAGLSRCG KSCRLRWINY  60
LRPDLKRGAF SQEEEKTIIE LHAVLGNRWS QIATHLPGRT DNEIKNYWNS CIKKKFRQQG  120
IDPTNHGPTH LHPHQQNRNC RNMAFKSQAG RHNSAGTYNS LDRESSGEYS TLTSDQTHSK  180
LGTQSRPWPV ISRIYPSMGA TSLKSCNSTP NLDHTNNNLN PVSMENYHMF LQNVLQRNGQ  240
LLENIVNPGA AMGRPNYGNS NPFISSNSGS SSEFYDPHVT PSVPEEPAPL TSIPPAYNPM  300
YWAPSSNGCL SSTKSTLSAG SEFSTTGFGE STLMVNSGGG ASDSFNTTRP PSISSLYGED  360
LSLGAIVAAA NKSTLTGSFP SSDASQDCLS PGDAKVAAAL ECPRGKVSEP LSPIELMNGA  420
QIFPSSNGYC GIEDGGTPEE STGTNSVPPI DSDSILEITN WGDLPEISVL DVCDPVVSAG  480
SGVAVDIDQD LVLVIEEGAV GDQTAEIPNV AAKLSLFEML TDFGEVSKAY KNSNRNHSQD  540
TVWKSEAPLF RRDHTPAFWQ ATATGNCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121155107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VIZ90.0A0A176VIZ9_MARPO; Uncharacterized protein
TrEMBLA0A2R6WNB30.0A0A2R6WNB3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-76myb domain protein 86