PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0066s0103.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | ERF | ||||||||
Protein Properties | Length: 497aa MW: 53419.6 Da PI: 8.3301 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 290 | 340 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +grW AeIrd r r++lg+f+t+e+Aa+a++aa++kl+g+ Mapoly0066s0103.1.p 290 VFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEDAARAYDAAARKLRGA 340 59*******.**********32....25**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 289 | 347 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-21 | 290 | 348 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-13 | 290 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.904 | 290 | 347 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 290 | 353 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.80E-19 | 291 | 346 | No hit | No description |
PRINTS | PR00367 | 5.1E-9 | 291 | 302 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-9 | 313 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MALHDVLLSS SYNAIPFFRS ETMMKQELSW LDERSWRSCA RCSSVSPQVI CPACTTLAMS 60 ANPTSLFSSS PVGSDSAHNA ALLDDQFWTF TNGTSDQKTG PIKREKLEED HLKSLPSIMP 120 SLQHSFASTR DGGSDGQEVD LDMIGIGAVV GRGVLFGANS SDNFATAAFT TALAPSGSIP 180 MLNRSSSSSS PPSSSCGGAF IHLADLLRQT RAPSPPTGGN LKESAVLSPP VSAAMTPGCH 240 QTVTHNSIQQ PQQARPAIPV SAAEEVESKV VSTTDSRVTS GDGTGTSGRV FRGVRKRPWG 300 RWSAEIRDRI GRCRHWLGTF DTPEDAARAY DAAARKLRGA KARTNFTIPT SPSSPLQMSP 360 QPDPATSRQR SKPSLQRAAS MKAAYSRPIS ENESLISSKD RCLTKSNTMW PRVNEVKIAD 420 MASFASNLSQ RNLGASSPQS DLCASDNHSA YDMLELELNL GARSPSYRDN GTVAFDSSQS 480 VFVLEFPQQQ WRSYSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 281 | 346 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176VQU1 | 0.0 | A0A176VQU1_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 2e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0066s0103.1.p |