PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0064s0079.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family DBB
Protein Properties Length: 329aa    MW: 35329.4 Da    PI: 5.6132
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0064s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-06447542
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          C+ +e+  +++ C  ++  lC++C + +H        H++v+l
  Mapoly0064s0079.1.p  4 QCDGCERAVASIMCCADEAALCNECDTRIHAAnklankHQRVSL 47
                         7*****************************66789999998875 PP
2zf-B_box35.12.8e-115294238
             zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         e ++C+ ++ek + +fC +++ llC+dC +++H+       H+
  Mapoly0064s0079.1.p 52 ESPRCDICQEKSAFFFCLEDRALLCRDCDVSIHSAtalssaHQ 94
                         6799*****************************6566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000212.53E-6347No hitNo description
PROSITE profilePS501199.4855198IPR000315B-box-type zinc finger
SMARTSM003367.3E-155198IPR000315B-box-type zinc finger
PfamPF006433.5E-95294IPR000315B-box-type zinc finger
CDDcd000214.12E-115498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0016607Cellular Componentnuclear speck
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRVQCDGCER AVASIMCCAD EAALCNECDT RIHAANKLAN KHQRVSLMGQ TESPRCDICQ  60
EKSAFFFCLE DRALLCRDCD VSIHSATALS SAHQRFLVPG TRVALEALSN SSPAPQETAT  120
SEELARHPLS SIINGTATNS SKSPSVSYKQ SSYYTPTPSF TSPSSGKTSV ITSNKSVGMS  180
NTSANHQSVS STQAKRTSIT EFLSDAIPNW RVDELLNIPE LGEGYSLGDI ASSKADQANL  240
GDYDWTADLS LFDEQVYAES FHEVPQMFSN PAASGMCRTG RATGAMKGKA KQDSLVPEYD  300
DAFVVPDLGL HSAPASPPVA KRRRLLEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320324KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024401288.11e-123B-box zinc finger protein 24-like
RefseqXP_024401289.11e-123B-box zinc finger protein 24-like
TrEMBLA0A176VIM50.0A0A176VIM5_MARPO; Uncharacterized protein
TrEMBLA0A2R6WRC20.0A0A2R6WRC2_MARPO; Uncharacterized protein
STRINGPP1S98_84V6.11e-122(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-46light-regulated zinc finger protein 1