PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0061s0107.1.p
Common NameC3HDZ1
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family HD-ZIP
Protein Properties Length: 850aa    MW: 92627.5 Da    PI: 6.2694
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0061s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18664357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Mapoly0061s0107.1.p  6 KYVRYTNEQVEALERVYNECPKPSSIRRQQLIKDCpilaNIEPKQIKVWFQNRRCREKQ 64
                         5678*****************************************************97 PP
2START157.61e-491643702203
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+++l+d++ W +++++ ++l +  +g  g
  Mapoly0061s0107.1.p 164 IAEETLTEFLAKATGTAIDWIQMPGMKPGPDSIGIVAISHGCAGVAARACGLVGLEPT-KVADVLKDRPAWLRDCRRLDVLGAFPTGngG 252
                          6899******************************************************.9****************************** PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++a+++l+p Rdf ++Ry+  l++g +vi+++S++     p+    + +vRae+lpSg+li+p+++g++ +++v+h+dl+ +
  Mapoly0061s0107.1.p 253 TVELIYTQMYAPTTLAPaRDFCTLRYTSFLEDGNLVICERSLSGAHGAPTmppVQFFVRAEMLPSGYLIRPCEGGGCIIHIVDHMDLEPW 342
                          ******************************************976555554447899********************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrq 203
                          +++++lr+l++s+++ ++k++  +l+++
  Mapoly0061s0107.1.p 343 SVPEVLRPLYESSAVLAQKMTIGALRHL 370
                          *******************998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.321165IPR001356Homeobox domain
SMARTSM003891.8E-14369IPR001356Homeobox domain
SuperFamilySSF466892.27E-16568IPR009057Homeodomain-like
CDDcd000865.61E-16666No hitNo description
PfamPF000461.1E-15764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-18864IPR009057Homeodomain-like
PROSITE profilePS5084825.461154382IPR002913START domain
CDDcd088751.09E-79158374No hitNo description
Gene3DG3DSA:3.30.530.201.2E-23162369IPR023393START-like domain
SMARTSM002341.8E-38163373IPR002913START domain
SuperFamilySSF559618.24E-39164375No hitNo description
PfamPF018522.7E-47164370IPR002913START domain
PfamPF086702.2E-45703848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MDASGKYVRY TNEQVEALER VYNECPKPSS IRRQQLIKDC PILANIEPKQ IKVWFQNRRC  60
REKQRKEATR LLSVNAKLTA LNKLLMEENE RLSKHTSQLA IENQYLRQHT SSERNLKPSR  120
RLHEQAGMAT PDTSSESVVT GGLQRHPTPQ HPPRDASPAG LLAIAEETLT EFLAKATGTA  180
IDWIQMPGMK PGPDSIGIVA ISHGCAGVAA RACGLVGLEP TKVADVLKDR PAWLRDCRRL  240
DVLGAFPTGN GGTVELIYTQ MYAPTTLAPA RDFCTLRYTS FLEDGNLVIC ERSLSGAHGA  300
PTMPPVQFFV RAEMLPSGYL IRPCEGGGCI IHIVDHMDLE PWSVPEVLRP LYESSAVLAQ  360
KMTIGALRHL RRLAQEIPGE VVLGSDQQPA VLRALSQRLA RGFNEAVNGF ADDGWTTLPS  420
DGMDDVSVVV NPNPNSKQFG GGPNATDRLC SIGGGILCAK ASMLLQNVPP ALLIRFLREH  480
RSEWADCEID ADAAAALRST NYVGSESRGS LCGGQLPLPL AHAVEQEEFL EVVKLEGHSP  540
TQDGGVLNRS DSFLLQLCSG VDENAVGACA QLVFAPVDVA VTDDVPLLAS GFRVIPLDSG  600
IVDGYGLSRT LDLTSTLEGG SEARLVGDSG ASACHLRSVL TIAFQFAFEV HTRDSVAAMA  660
RQYVRTVVAS VQRVAMALAP SRLGSHLGGT RHPPPATPEA LVLARRVLQS YRSYMGMELT  720
RELERTDYSN SEALFKIFWN HSDAILCCAC KSLPEFTFGN RAGLEMLETS SGALQELTWE  780
KTLDENGRKT AYSDFTQVMT QGYACLPAGV RISSMGRPAT YQQAIAWKVV DEDDHTHCIA  840
FMFTNWSFL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3855140.0DQ385514.1 Marchantia polymorpha class III homeodomain-leucine zipper protein C3HDZ1 (C3HDZ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399220.10.0homeobox-leucine zipper protein HOX32-like isoform X3
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1B4Z1R80.0A0A1B4Z1R8_MARPO; Class III homeodomain-leucine zipper protein
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Floyd SK,Zalewski CS,Bowman JL
    Evolution of class III homeodomain-leucine zipper genes in streptophytes.
    Genetics, 2006. 173(1): p. 373-88
    [PMID:16489224]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]