PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0061s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB | ||||||||
Protein Properties | Length: 1262aa MW: 140904 Da PI: 6.1468 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.6e-11 | 434 | 479 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT+ Ed++l+ ++ + +W++Ia+++g++Rt+ +c r+q Mapoly0061s0069.1.p 434 KSSWTKTEDKKLLSIAQRNKTTNWEKIAQELGTNRTPAECLTRYQR 479 578*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 487 | 533 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r WT+eEd +l av++lG +W+++a+++ gR qc rw+k+l Mapoly0061s0069.1.p 487 RSVWTPEEDAKLRAAVEELGESDWSLVAACLE-GRNNSQCLMRWYKVL 533 678*****************************.************986 PP | |||||||
3 | Myb_DNA-binding | 52.6 | 1e-16 | 540 | 586 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grW+ eEd++l av ++G + Wk Ia++++ gRt+ qc++rw ++l Mapoly0061s0069.1.p 540 KGRWSVEEDKRLNWAVSLHGARKWKQIANHVP-GRTDIQCRERWCNVL 586 79******************************.***********9975 PP | |||||||
4 | Myb_DNA-binding | 37.2 | 6.6e-12 | 594 | 635 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eEd+ l + v+++G+++W++Ia + Rt+kqc rw Mapoly0061s0069.1.p 594 TWTEEEDQTLRESVALHGPHRWSAIATDLK-VRTDKQCWRRWK 635 7****************************9.9*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.8E-4 | 335 | 430 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-12 | 338 | 354 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00113 | 391 | 427 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-12 | 401 | 435 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.214 | 403 | 428 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.35E-16 | 411 | 478 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.835 | 429 | 485 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-9 | 433 | 483 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-10 | 434 | 479 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 436 | 483 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.38E-18 | 467 | 537 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 486 | 535 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-11 | 487 | 533 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-16 | 487 | 536 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.766 | 487 | 534 | IPR017930 | Myb domain |
CDD | cd00167 | 1.70E-11 | 490 | 533 | No hit | No description |
PROSITE profile | PS51294 | 26.661 | 535 | 590 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-19 | 539 | 585 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 539 | 588 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 540 | 586 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.42E-12 | 542 | 586 | No hit | No description |
SuperFamily | SSF46689 | 9.71E-24 | 566 | 639 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-16 | 586 | 635 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.109 | 591 | 642 | IPR017930 | Myb domain |
SMART | SM00717 | 8.0E-11 | 591 | 640 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-11 | 594 | 635 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.14E-11 | 594 | 635 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1262 aa Download sequence Send to blast |
MVIHAGDDSE EEEDDEDIAM EEGFQGHLDA LKRACLLNIG QDSFLTTGAG SLPDTASTLE 60 EDDEELFESI QKKYFLGSLD KVSIPQGRPS SNSDDEDEEQ DDEEILRSVE KLYSVTELSR 120 QISNEVDENA VFLEVRIDSP VHAGSEAPDE SSSRPEDSDK DVTHPVKDLG RAVSTLLPSN 180 WNEEEDPEFN PPSPNSAVVA YDPYKHHTDE LLCEDYGNYG SEDKEKMIGE ALQKNLSYQQ 240 NLRNILNRIE SKQKHNAEMQ RRVRTLLDFE KYCKRKYAVF FTDQANPSLK LFSVGRGGYQ 300 SRNDDKSDYH PGGPPDNADV EVYKMLKQKA TFASMSRRWR AEELRELAKG VKQQIYEVLV 360 CEAMDAISNG DIIGDNALEN SLSAIRNKEL TPEEMRNAIA DVNWNEVARV YVVNRTPEEC 420 RTRWLNHEDP LINKSSWTKT EDKKLLSIAQ RNKTTNWEKI AQELGTNRTP AECLTRYQRS 480 LNASIMRSVW TPEEDAKLRA AVEELGESDW SLVAACLEGR NNSQCLMRWY KVLHPRKQKK 540 GRWSVEEDKR LNWAVSLHGA RKWKQIANHV PGRTDIQCRE RWCNVLNPDI KLDTWTEEED 600 QTLRESVALH GPHRWSAIAT DLKVRTDKQC WRRWKILFPE EQPDYKRTVF IQRNALIGNF 660 QGRKKERPKL GPQDFVSKAD TFGVPSNIVR ETKSKRRTSS RSAEERTTSR SAKKRTNSRS 720 AKKSSVSVPA DECGRNSSTP TTAASIQRDS AHSSQDQQDS TNHEGQDLTI YGERGTITSE 780 STVIGALEEV SVNGNDTLAD SKLRRLARIH KLKLSRANKL ANSANLVLPR SAQSTRSTPD 840 NQSEYGQNEV TDPSSSAQVQ IEKKKGRKRS RTEGSDGLGN PSKRPRKISS KRTSDVLECD 900 IQSSSQLSEV SPHLSSEETE PSSSGGLLAV TDGAEQGVTN GGTAEVICKS KKRSRVSACP 960 QPRRVSKRRR PDNMCLPSRD SDIQTAAEEP PVVRPEPGPA ILSLVDLVHS INEFCKYTFL 1020 LNEEQHVQAL PDPDVSDTAV RVGVEDITSG SSALGPQLCP DPVQERYLRL VHDHDTPFVD 1080 TESIPANGHG CRTERRMVAS KPTAGGACDA LWCPNSGVNR IAVRSDGEGE TRLITHANTE 1140 SNMGGVQDGP SRLSPEDEEV AAATKAILSW PFFYGVQQLT LRADEYLNSK APRKSSTARP 1200 PKSTKKGKSL GTSETIVETQ PVAVPTPVTA VDNPVSKRPR SARCAARMRG TSRERTSEQD 1260 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-28 | 403 | 634 | 2 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-28 | 403 | 634 | 2 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 950 | 969 | KKRSRVSACPQPRRVSKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WSL1 | 0.0 | A0A2R6WSL1_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7355 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-103 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0061s0069.1.p |