PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0058s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 23103.2 Da PI: 7.4082 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.5 | 1.5e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasn++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql Mapoly0058s0090.1.p 8 PCAACKFLRRKCTAECVFAPYFPPDQPHKFANVHKIFGASNITKLLNELPVQQREDAVNSLAYEADARVKDPVYGCVGAISVLQRQVAQL 97 7***************************************************************************************** PP DUF260 91 kaelallkee 100 ++ela +++ Mapoly0058s0090.1.p 98 QQELAIAHSD 107 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.154 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MASSSSSPCA ACKFLRRKCT AECVFAPYFP PDQPHKFANV HKIFGASNIT KLLNELPVQQ 60 REDAVNSLAY EADARVKDPV YGCVGAISVL QRQVAQLQQE LAIAHSDLAR YAGAGMVGGP 120 GSVTQGMPSS SLGIGMGLSP APSREQQQQM LTREQLLDLA REPQLSREQL LELARVGGGS 180 YEAGLAALGL TGALGPLGPF PSRQGSDGSG SGGGMGGHLS PP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-59 | 7 | 123 | 10 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-59 | 7 | 123 | 10 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00581 | DAP | Transfer from AT5G63090 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356367.1 | 1e-107 | protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Refseq | XP_024356368.1 | 1e-107 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_024356369.1 | 1e-107 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_024356370.1 | 1e-107 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Refseq | XP_024356371.1 | 1e-107 | protein LATERAL ORGAN BOUNDARIES-like isoform X2 | ||||
Swissprot | Q9FML4 | 4e-60 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2R6WTX8 | 1e-158 | A0A2R6WTX8_MARPO; Uncharacterized protein | ||||
STRING | PP1S170_93V6.1 | 1e-107 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 5e-60 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0058s0090.1.p |
Publications ? help Back to Top | |||
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