PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0058s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 903aa MW: 92865.1 Da PI: 9.8989 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 193 | 215 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Mapoly0058s0031.1.p 193 FVCEICNKGFQRDQNLQLHRRGH 215 89******************988 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00073 | 269 | 291 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Mapoly0058s0031.1.p 269 WKCDKCSKRYAVQSDWKAHSKTC 291 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 192 | 215 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.33E-7 | 192 | 215 | No hit | No description |
SMART | SM00355 | 0.017 | 193 | 215 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 193 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 195 | 215 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 234 | 264 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 257 | 290 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.33E-7 | 264 | 289 | No hit | No description |
SMART | SM00355 | 140 | 269 | 289 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MLPSLLLAPT DAPWFGNNSN NINSNWAAGL KGGDLRGCEV DGIGDTSNTL FVEAKSELLS 60 FGSAELSCSS LSDGTSSGKR AKRGALAQET GGGAVNSPHS NGVGLSAMTL SNLTSASGEA 120 SVSSGTRGDA STVPPSGGQT NNPATPATPT TTTNTTASGQ PGVKRKRNLP GTPDPDAEVI 180 ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSKEIR KRVYICPEPT 240 CVHHEPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC 300 GTLFSRRDSF ITHRAFCDAL AEESARVSAG KPGQGPGDHS MGAGPSAGGM SVMGAPQSPR 360 SQGVVRMGGG QMDPLSANTP PRPGMAGNFP GMGMGEGSLP IPAGRWGQPG PGAGPTTPGT 420 GTRLSLWSGP GPGPPGLMGG PQLQLGGNSQ MNPMDANSPF LMQPPKGMHG SGMSSMMGGS 480 DFDIPQAPRP SGGGMMQMPP PGPGSIFANL FASGNGLAGM QQSGPGQSGG NMQMGNMSGG 540 FSDFTGGAPT RLERGGSGAA GLTLSSSAGM TSSSSSANNN GAGTVPSVSS ILNQQQQQHT 600 STSQMSATAL LQKAAQMGAT ASNSSLLRGF GMGGGPGGQG GSGQGGQGGG TDNNNSIPIG 660 ALWQGPNRQD QGRAGSLPPI SSGMGGLSHP MLRRPGDPSP GSQGMGSSLP PPTFGGGQGR 720 SNEHQEFINS LTQFSGGMGN LPPMYPSSLG NSGNMGGMMP PTSPMQHRMQ GGNDNIGAQQ 780 QQQQQQQNQQ QQQQQQQQQQ HQQQQQQQQQ QQHTLHGGSQ PGGMPQSMMP GLPKTEDGGD 840 RFTRDFLGVG ATTTNMPGRA ISQRELAGIA PLGPGVDMSF NNQQRSVGPS GQPSPGKSWD 900 GS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-36 | 265 | 329 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 1e-36 | 265 | 329 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365599.1 | 0.0 | protein indeterminate-domain 1-like isoform X1 | ||||
TrEMBL | A0A176WC35 | 0.0 | A0A176WC35_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6WTT4 | 0.0 | A0A2R6WTT4_MARPO; Uncharacterized protein | ||||
STRING | PP1S165_3V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-112 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0058s0031.1.p |