PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0054s0021.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 383aa    MW: 42993.2 Da    PI: 4.5578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0054s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12173216755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +Er+RR+++N+++  Lr l+Pk      +K++ a+iL  A+eY+++Lq
  Mapoly0054s0021.1.p 173 VAERKRRKKLNERLYALRALVPKI-----TKMDRASILGDAIEYVRELQ 216
                          68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-16166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.859166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-15172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10173216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16173226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-12173219No hitNo description
SuperFamilySSF550211.63E-5286353No hitNo description
PROSITE profilePS516718.887287362IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVLSPEASLS SGSTREVERT LDKKDGKSFY NPGGEGCSRN FELDPHSENP WSTPSEIWEQ  60
EEALMNSQTQ MQLNFLDQKD VPLGGLGHPY EELVPGNQTL HDIIMPAAGV QSLRTSLGGD  120
AFGDALSKES GDREIKQEMR ADSSDGSDPM DEDEDKGGSG SRSGRRHLSK NLVAERKRRK  180
KLNERLYALR ALVPKITKMD RASILGDAIE YVRELQARVD CLQKELLDDE EILNVDAILE  240
DGNREGCFED IKTSEPRLDI IPEEQQIENL VQPMEVYVHK LDEAVFTVRI ISEKSEGMFL  300
GVLRIMDEYG FDILHANIIT HRGIALHVFR AEIRDKKTPT IEQVKESLLQ LSKFQFGGFD  360
NPNELVNEPM NIVSSTPDHR QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-141742191257Transcription factor MYC2
5gnj_B4e-141742191257Transcription factor MYC2
5gnj_E4e-141742191257Transcription factor MYC2
5gnj_F4e-141742191257Transcription factor MYC2
5gnj_G4e-141742191257Transcription factor MYC2
5gnj_I4e-141742191257Transcription factor MYC2
5gnj_M4e-141742191257Transcription factor MYC2
5gnj_N4e-141742191257Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WVM30.0A0A2R6WVM3_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-29bHLH family protein