PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0054s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C3H | ||||||||
Protein Properties | Length: 147aa MW: 15779.5 Da PI: 8.2137 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 53 | 73 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C +f+rtGtC+yG++C++aH Mapoly0054s0011.1.p 53 VCAYFQRTGTCNYGSNCQYAH 73 6******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.8E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
Pfam | PF06220 | 6.0E-12 | 4 | 39 | IPR013085 | Zinc finger, U1-C type |
SuperFamily | SSF57667 | 6.33E-16 | 4 | 47 | No hit | No description |
PROSITE profile | PS50103 | 14.483 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-7 | 52 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-8 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 53 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPTPKYVCDY CDKTFHDTPA SRKRHMQGIT HQRAVKAWYD SFRDKDQGGN RGVCAYFQRT 60 GTCNYGSNCQ YAHITHSGPS YAAAGMSVSN ISQSDLGPSP TNAAHGAPSA TSASVPVSRV 120 AENKLPPSLQ PPPEDGYPSL PFVDWG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455379.1 | 5e-41 | zinc finger CCCH domain-containing protein 3 isoform X2 | ||||
TrEMBL | A0A2R6WVN1 | 1e-105 | A0A2R6WVN1_MARPO; Uncharacterized protein | ||||
STRING | Pavir.Eb00973.1.p | 4e-41 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8539 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 4e-27 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0054s0011.1.p |