PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0050s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | LBD | ||||||||
Protein Properties | Length: 402aa MW: 43309.4 Da PI: 8.441 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.7 | 1.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG+s ++ +++a+p+++r+++++sl+yeA+ r+ +Pv Gavg+++++++ Mapoly0050s0090.1.p 2 SCNGCRVLRKGCSESCILRPCLqwidtPDSQGHATVFVAKFFGRSGLMGFISAVPPSQRPNVFQSLLYEACGRTVNPVFGAVGLLWAGKW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l Mapoly0050s0090.1.p 92 DVCQAAVETVLK 103 ******998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.722 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDTPD SQGHATVFVA KFFGRSGLMG FISAVPPSQR 60 PNVFQSLLYE ACGRTVNPVF GAVGLLWAGK WDVCQAAVET VLKGGSLRPP SPTAMEVNSG 120 LCNGGMRSIP FPVVKPSQNL SCPSDTAGLA ASGEKPQCFN RVREEILEGM VNAQHSDRAR 180 QELMFAFETK AKAIDGEPPL VQQFGIDQGV HEGEFMKYAP GRFDFPSVRG LNMPSLKKGN 240 EGEKRETEER TTDGPQVVVP LARRVANRTK VLDLRPPCST SDAPVARVEN EEREKLELDL 300 TLSSVSAAKE EPKAWTSGFV PLGDHKVRLA SKTGIACKGM KRVLSPNSSE SVNSEGSVTS 360 LDSTCDLSLS RASTGFWKAH KCAPGPVSSS HSRKALTLFH T* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6WXQ9 | 0.0 | A0A2R6WXQ9_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 4e-65 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0050s0090.1.p |