PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0050s0010.3.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family E2F/DP
Protein Properties Length: 439aa    MW: 47842.5 Da    PI: 6.3333
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0050s0010.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.54.7e-28172253371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
  Mapoly0050s0010.3.p 172 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEyknpdnvlfspdqqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIQWKG 253
                          79********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-46167259IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.7E-34170253IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.13E-22173254IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-25173253IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144589.29E-40258362IPR014889Transcription factor DP, C-terminal
SMARTSM011381.5E-53260434IPR014889Transcription factor DP, C-terminal
PfamPF087813.4E-36261372IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-37261372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MYGQRGFDGG SSRKGNNPGF KTGPRTKPPG RSTAPILGSS SSLQSDLLRE FHETGIYGHA  60
EDIGIIRNGE LSLLSNGSTG GHDYSRGPGE GKDMHGGMQF TSTTVGPSVS MDSGSMGSPS  120
QGTEATMGTP GPNGIPLRLQ HPESMGDDPE SPDVIGRKKK RGQRTAAGEK GGKGLRHFSM  180
KVCEKVESKG RTTYNEVADE LVAEYKNPDN VLFSPDQQQF DEKNIRRRVY DALNVLMAMD  240
IISKEKKEIQ WKGLPSTSAN NAEALKAERI KLSGLLEKKG AYLQELEEQI VGLQNLVDRN  300
ERMYHIKGHV PAGGVALPFI LVQTRPQATV EVEISEDMQL VHFDFNSTPF ELHDDAFVLK  360
AMSFGDGQNS DNRDLPFTDS EEGFEPAYDD HSSPVSNLYH RPSIMSMSPR PPPPYSVSTS  420
PPPVPSILKA RVKHENYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-38164259194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002964245.21e-143transcription factor-like protein DPB isoform X5
SwissprotQ9FNY21e-114DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2R6WXE80.0A0A2R6WXE8_MARPO; Uncharacterized protein
STRINGXP_010241817.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-116Transcription factor DP